(61 nodes) Segmentation network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_011418	Homeobox domain-containing protein. (240 aa)
	ASZ78_014311	Uncharacterized protein. (357 aa)
	ASZ78_014307	TBX domain-containing protein. (732 aa)
	ASZ78_000072	SH3 domain-containing protein. (292 aa)
	ASZ78_016417	Uncharacterized protein. (671 aa)
	ASZ78_006927	Uncharacterized protein; Belongs to the semaphorin family. (789 aa)
	ASZ78_005443	Fork-head domain-containing protein. (478 aa)
	ASZ78_005445	RRM domain-containing protein. (344 aa)
	ASZ78_001882	Homeobox domain-containing protein. (207 aa)
	ASZ78_007780	Uncharacterized protein. (926 aa)
	ASZ78_017013	Uncharacterized protein. (829 aa)
	ASZ78_017012	Cobl domain-containing protein. (225 aa)
	ASZ78_006142	Fork-head domain-containing protein. (367 aa)
	ASZ78_012210	Uncharacterized protein. (147 aa)
	ASZ78_009330	Uncharacterized protein. (864 aa)
	ASZ78_014787	Uncharacterized protein. (669 aa)
	ASZ78_006143	Uncharacterized protein. (180 aa)
	ASZ78_011695	Uncharacterized protein. (374 aa)
	ASZ78_001269	Uncharacterized protein. (257 aa)
	ASZ78_000725	Uncharacterized protein. (2519 aa)
	ASZ78_006717	Uncharacterized protein. (884 aa)
	ASZ78_015403	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2168 aa)
	ASZ78_015757	Uncharacterized protein. (191 aa)
	ASZ78_012842	BHLH domain-containing protein. (241 aa)
	ASZ78_002255	Uncharacterized protein. (1210 aa)
	ASZ78_015686	IRS-type PTB domain-containing protein. (513 aa)
	ASZ78_012841	BHLH domain-containing protein. (242 aa)
	ASZ78_002168	PLD phosphodiesterase domain-containing protein. (207 aa)
	ASZ78_007988	CAP10 domain-containing protein. (458 aa)
	ASZ78_014365	HMG box domain-containing protein. (330 aa)
	ASZ78_005475	Uncharacterized protein. (380 aa)
	ASZ78_004691	Beta-1,3-N-acetylglucosaminyltransferase. (341 aa)
	ASZ78_011634	ANK_REP_REGION domain-containing protein. (114 aa)
	ASZ78_002576	Uncharacterized protein; Belongs to the semaphorin family. (716 aa)
	ASZ78_001921	Uncharacterized protein. (481 aa)
	ASZ78_008240	RECA_2 domain-containing protein. (287 aa)
	ASZ78_009027	Homeobox domain-containing protein. (374 aa)
	ASZ78_007765	Uncharacterized protein. (456 aa)
	ASZ78_014739	Uncharacterized protein. (257 aa)
	ASZ78_002026	Uncharacterized protein. (67 aa)
	ASZ78_002024	GOLD domain-containing protein. (209 aa)
	ASZ78_005959	Neuropilin; Belongs to the neuropilin family. (846 aa)
	ASZ78_002984	Homeobox domain-containing protein. (453 aa)
	ASZ78_009754	Uncharacterized protein. (352 aa)
	ASZ78_009768	TBX domain-containing protein. (594 aa)
	ASZ78_009770	Uncharacterized protein. (71 aa)
	ASZ78_017111	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (708 aa)
	ASZ78_016630	Uncharacterized protein. (1030 aa)
	ASZ78_016631	Uncharacterized protein. (276 aa)
	ASZ78_015059	FERM domain-containing protein. (751 aa)
	ASZ78_010984	Uncharacterized protein. (505 aa)
	ASZ78_002334	Uncharacterized protein. (157 aa)
	ASZ78_009670	DUF3715 domain-containing protein. (1636 aa)
	ASZ78_011790	Dickkopf_N domain-containing protein. (247 aa)
	ASZ78_000030	Tudor domain-containing protein. (434 aa)
	ASZ78_004211	Mothers against decapentaplegic homolog. (479 aa)
	ASZ78_001394	Uncharacterized protein. (1743 aa)
	ASZ78_002817	Homeobox domain-containing protein. (195 aa)
	ASZ78_004357	Uncharacterized protein. (2454 aa)
	ASZ78_002876	WD_REPEATS_REGION domain-containing protein. (514 aa)
	ASZ78_002298	TGF_BETA_2 domain-containing protein. (199 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000030	ASZ78_001394	A0A226MER2	A0A226MF97	Tudor domain-containing protein.	Uncharacterized protein.	0.601
ASZ78_000030	ASZ78_002168	A0A226MER2	A0A226NM12	Tudor domain-containing protein.	PLD phosphodiesterase domain-containing protein.	0.530
ASZ78_000030	ASZ78_006717	A0A226MER2	A0A226N3Y5	Tudor domain-containing protein.	Uncharacterized protein.	0.601
ASZ78_000030	ASZ78_007765	A0A226MER2	A0A226N8I3	Tudor domain-containing protein.	Uncharacterized protein.	0.601
ASZ78_000030	ASZ78_009330	A0A226MER2	A0A226MBQ6	Tudor domain-containing protein.	Uncharacterized protein.	0.444
ASZ78_000030	ASZ78_014787	A0A226MER2	A0A226MDJ4	Tudor domain-containing protein.	Uncharacterized protein.	0.444
ASZ78_000072	ASZ78_010984	A0A226MNY1	A0A226NFK6	SH3 domain-containing protein.	Uncharacterized protein.	0.526
ASZ78_001269	ASZ78_002334	A0A226N0C4	A0A226MDL8	Uncharacterized protein.	Uncharacterized protein.	0.911
ASZ78_001269	ASZ78_004691	A0A226N0C4	A0A226NIT0	Uncharacterized protein.	Beta-1,3-N-acetylglucosaminyltransferase.	0.547
ASZ78_001269	ASZ78_011634	A0A226N0C4	A0A226NH36	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.468
ASZ78_001394	ASZ78_000030	A0A226MF97	A0A226MER2	Uncharacterized protein.	Tudor domain-containing protein.	0.601
ASZ78_001882	ASZ78_011418	A0A226MSV0	A0A226MKZ6	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.682
ASZ78_001921	ASZ78_010984	A0A226N6Z6	A0A226NFK6	Uncharacterized protein.	Uncharacterized protein.	0.411
ASZ78_001921	ASZ78_017111	A0A226N6Z6	A0A226NCV3	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.490
ASZ78_002168	ASZ78_000030	A0A226NM12	A0A226MER2	PLD phosphodiesterase domain-containing protein.	Tudor domain-containing protein.	0.530
ASZ78_002168	ASZ78_009330	A0A226NM12	A0A226MBQ6	PLD phosphodiesterase domain-containing protein.	Uncharacterized protein.	0.498
ASZ78_002168	ASZ78_014787	A0A226NM12	A0A226MDJ4	PLD phosphodiesterase domain-containing protein.	Uncharacterized protein.	0.572
ASZ78_002255	ASZ78_008240	A0A226NNI6	A0A226N714	Uncharacterized protein.	RECA_2 domain-containing protein.	0.807
ASZ78_002255	ASZ78_015403	A0A226NNI6	A0A226N6H7	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.768
ASZ78_002298	ASZ78_004211	A0A226MIE7	A0A226MF11	TGF_BETA_2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.631