52 items (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_002541	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	ASZ78_013354	Uncharacterized protein. (364 aa)
	ASZ78_015112	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (501 aa)
	ASZ78_006752	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (112 aa)
	ASZ78_000285	Uncharacterized protein. (428 aa)
	ASZ78_016334	Uncharacterized protein. (431 aa)
	RPSA	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (296 aa)
	ASZ78_004928	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (531 aa)
	ASZ78_000018	MFS domain-containing protein. (1244 aa)
	ASZ78_006432	Ribosomal_S7 domain-containing protein. (259 aa)
	ASZ78_009110	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (126 aa)
	ASZ78_014846	Uncharacterized protein. (448 aa)
	ASZ78_012503	Bms1-type G domain-containing protein. (747 aa)
	ASZ78_005977	Uncharacterized protein. (658 aa)
	ASZ78_015564	Sm domain-containing protein. (69 aa)
	ASZ78_007644	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (125 aa)
	ASZ78_012355	Uncharacterized protein. (1033 aa)
	ASZ78_007402	BP28CT domain-containing protein. (1916 aa)
	ASZ78_003388	Sas10 domain-containing protein. (509 aa)
	ASZ78_004503	Uncharacterized protein. (393 aa)
	ASZ78_004808	Uncharacterized protein. (115 aa)
	ASZ78_008107	Uncharacterized protein. (69 aa)
	ASZ78_001215	RRP7 domain-containing protein. (275 aa)
	ASZ78_010211	Uncharacterized protein. (173 aa)
	ASZ78_011868	RIO domain-containing protein. (551 aa)
	ASZ78_002623	Uncharacterized protein. (771 aa)
	ASZ78_011256	WD_REPEATS_REGION domain-containing protein. (629 aa)
	ASZ78_014030	BUD22 domain-containing protein. (442 aa)
	ASZ78_006810	Uncharacterized protein. (246 aa)
	ASZ78_016788	Uncharacterized protein. (226 aa)
	ASZ78_016789	NUC153 domain-containing protein. (230 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1071 aa)
	ASZ78_016791	Uncharacterized protein. (80 aa)
	ASZ78_002887	MI domain-containing protein. (754 aa)
	ASZ78_009744	Uncharacterized protein. (592 aa)
	ASZ78_007386	Uncharacterized protein. (288 aa)
	ASZ78_008387	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (425 aa)
	ASZ78_006577	NUC205 domain-containing protein. (756 aa)
	ASZ78_008375	WD_REPEATS_REGION domain-containing protein. (688 aa)
	ASZ78_014659	40S ribosomal protein S27. (87 aa)
	ASZ78_011777	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (173 aa)
	ASZ78_014224	WD_REPEATS_REGION domain-containing protein. (445 aa)
	ASZ78_006790	Uncharacterized protein. (951 aa)
	ASZ78_003294	Uncharacterized protein. (1493 aa)
	ASZ78_002218	WD_REPEATS_REGION domain-containing protein. (809 aa)
	ASZ78_002271	Probable ribosome biogenesis protein ASZ78_002271; Probable pre-rRNA processing protein involved in ribosome biogenesis. (243 aa)
	ASZ78_000445	Uncharacterized protein. (149 aa)
	ASZ78_012844	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	ASZ78_000446	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (93 aa)
	ASZ78_009544	SURF6 domain-containing protein. (354 aa)
	ASZ78_005367	Uncharacterized protein. (753 aa)
	ASZ78_011294	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (726 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000018	ASZ78_000285	A0A226MM69	A0A226MHR1	MFS domain-containing protein.	Uncharacterized protein.	0.999
ASZ78_000018	ASZ78_000445	A0A226MM69	A0A226NM89	MFS domain-containing protein.	Uncharacterized protein.	0.890
ASZ78_000018	ASZ78_000446	A0A226MM69	A0A226NMY5	MFS domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.890
ASZ78_000018	ASZ78_001215	A0A226MM69	A0A226MZF3	MFS domain-containing protein.	RRP7 domain-containing protein.	0.992
ASZ78_000018	ASZ78_002218	A0A226MM69	A0A226NM60	MFS domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
ASZ78_000018	ASZ78_002623	A0A226MM69	A0A226N3B0	MFS domain-containing protein.	Uncharacterized protein.	0.977
ASZ78_000018	ASZ78_002887	A0A226MM69	A0A226N8R6	MFS domain-containing protein.	MI domain-containing protein.	0.891
ASZ78_000018	ASZ78_003294	A0A226MM69	A0A226NK18	MFS domain-containing protein.	Uncharacterized protein.	0.999
ASZ78_000018	ASZ78_003388	A0A226MM69	A0A226MV99	MFS domain-containing protein.	Sas10 domain-containing protein.	0.999
ASZ78_000018	ASZ78_004808	A0A226MM69	A0A226MWR2	MFS domain-containing protein.	Uncharacterized protein.	0.920
ASZ78_000018	ASZ78_004928	A0A226MM69	A0A226MM68	MFS domain-containing protein.	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.525
ASZ78_000018	ASZ78_005367	A0A226MM69	A0A226NNS4	MFS domain-containing protein.	Uncharacterized protein.	0.994
ASZ78_000018	ASZ78_005977	A0A226MM69	A0A226MSX2	MFS domain-containing protein.	Uncharacterized protein.	0.997
ASZ78_000018	ASZ78_006432	A0A226MM69	A0A226MMI4	MFS domain-containing protein.	Ribosomal_S7 domain-containing protein.	0.968
ASZ78_000018	ASZ78_006577	A0A226MM69	A0A226NC60	MFS domain-containing protein.	NUC205 domain-containing protein.	0.451
ASZ78_000018	ASZ78_006810	A0A226MM69	A0A226N5N0	MFS domain-containing protein.	Uncharacterized protein.	0.911
ASZ78_000018	ASZ78_007402	A0A226MM69	A0A226MV56	MFS domain-containing protein.	BP28CT domain-containing protein.	0.996
ASZ78_000018	ASZ78_007644	A0A226MM69	A0A226MUL1	MFS domain-containing protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.636
ASZ78_000018	ASZ78_008107	A0A226MM69	A0A226MXI9	MFS domain-containing protein.	Uncharacterized protein.	0.965
ASZ78_000018	ASZ78_008375	A0A226MM69	A0A226NC92	MFS domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997