(36 nodes) Xenobiotic transport network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_009154	Uncharacterized protein. (537 aa)
	ASZ78_009838	Uncharacterized protein. (301 aa)
	ASZ78_002883	Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (534 aa)
	ASZ78_002882	Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (544 aa)
	ASZ78_012086	Uncharacterized protein. (1209 aa)
	ASZ78_003598	Uncharacterized protein. (145 aa)
	ASZ78_007526	MFS domain-containing protein. (231 aa)
	ASZ78_007525	MFS domain-containing protein. (352 aa)
	ASZ78_007527	MFS domain-containing protein. (554 aa)
	ASZ78_007528	MFS domain-containing protein. (541 aa)
	ASZ78_012502	Uncharacterized protein. (463 aa)
	ASZ78_009703	Uncharacterized protein. (1444 aa)
	ASZ78_012638	Uncharacterized protein. (336 aa)
	ASZ78_012643	Uncharacterized protein. (209 aa)
	ASZ78_006535	Cell cycle control protein; Belongs to the CDC50/LEM3 family. (373 aa)
	ASZ78_011975	ABC transporter domain-containing protein. (669 aa)
	ASZ78_010230	Uncharacterized protein. (495 aa)
	ASZ78_010513	Uncharacterized protein. (1400 aa)
	ASZ78_006398	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (211 aa)
	ASZ78_010827	MFS domain-containing protein. (473 aa)
	ASZ78_008837	Uncharacterized protein. (92 aa)
	ASZ78_008834	Uncharacterized protein. (169 aa)
	ASZ78_005188	MFS domain-containing protein. (525 aa)
	ASZ78_002115	ABC transmembrane type-1 domain-containing protein. (191 aa)
	ASZ78_002114	Uncharacterized protein. (911 aa)
	ASZ78_008326	Uncharacterized protein. (203 aa)
	ASZ78_008327	Uncharacterized protein. (315 aa)
	ASZ78_005060	Uncharacterized protein. (1463 aa)
	ASZ78_007511	Rho-GAP domain-containing protein. (657 aa)
	ASZ78_011943	Uncharacterized protein. (305 aa)
	ASZ78_010927	Uncharacterized protein. (1564 aa)
	ASZ78_015206	Uncharacterized protein. (2410 aa)
	ASZ78_004670	Uncharacterized protein. (527 aa)
	ASZ78_002283	Uncharacterized protein. (1436 aa)
	ASZ78_002284	Uncharacterized protein. (1669 aa)
	ASZ78_011399	Uncharacterized protein. (1077 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_002114	ASZ78_011975	A0A226N9L9	A0A226N192	Uncharacterized protein.	ABC transporter domain-containing protein.	0.581
ASZ78_002115	ASZ78_011975	A0A226N9B5	A0A226N192	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.581
ASZ78_002283	ASZ78_011975	A0A226NN73	A0A226N192	Uncharacterized protein.	ABC transporter domain-containing protein.	0.851
ASZ78_002283	ASZ78_015206	A0A226NN73	A0A226NJG9	Uncharacterized protein.	Uncharacterized protein.	0.463
ASZ78_002284	ASZ78_011975	A0A226NP14	A0A226N192	Uncharacterized protein.	ABC transporter domain-containing protein.	0.753
ASZ78_002883	ASZ78_007525	A0A226MH28	A0A226MPN0	Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.	MFS domain-containing protein.	0.564
ASZ78_003598	ASZ78_009154	A0A226MJ46	A0A226MCE7	Uncharacterized protein.	Uncharacterized protein.	0.864
ASZ78_003598	ASZ78_011399	A0A226MJ46	A0A226NQ66	Uncharacterized protein.	Uncharacterized protein.	0.852
ASZ78_003598	ASZ78_011975	A0A226MJ46	A0A226N192	Uncharacterized protein.	ABC transporter domain-containing protein.	0.409
ASZ78_004670	ASZ78_005188	A0A226NJH5	A0A226N841	Uncharacterized protein.	MFS domain-containing protein.	0.517
ASZ78_005060	ASZ78_011975	A0A226NCW2	A0A226N192	Uncharacterized protein.	ABC transporter domain-containing protein.	0.492
ASZ78_005188	ASZ78_004670	A0A226N841	A0A226NJH5	MFS domain-containing protein.	Uncharacterized protein.	0.517
ASZ78_005188	ASZ78_010827	A0A226N841	A0A226N621	MFS domain-containing protein.	MFS domain-containing protein.	0.807
ASZ78_007525	ASZ78_002883	A0A226MPN0	A0A226MH28	MFS domain-containing protein.	Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.	0.564
ASZ78_007525	ASZ78_007526	A0A226MPN0	A0A226MPM7	MFS domain-containing protein.	MFS domain-containing protein.	0.885
ASZ78_007526	ASZ78_007525	A0A226MPM7	A0A226MPN0	MFS domain-containing protein.	MFS domain-containing protein.	0.885
ASZ78_008326	ASZ78_008327	A0A226NBP3	A0A226NBR2	Uncharacterized protein.	Uncharacterized protein.	0.833
ASZ78_008327	ASZ78_008326	A0A226NBR2	A0A226NBP3	Uncharacterized protein.	Uncharacterized protein.	0.833
ASZ78_009154	ASZ78_003598	A0A226MCE7	A0A226MJ46	Uncharacterized protein.	Uncharacterized protein.	0.864
ASZ78_009154	ASZ78_011975	A0A226MCE7	A0A226N192	Uncharacterized protein.	ABC transporter domain-containing protein.	0.409