(20 nodes) T cell selection network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_016680	Uncharacterized protein. (924 aa)
	ASZ78_006600	Autophagy protein 5; Involved in autophagic vesicle formation. (200 aa)
	ASZ78_006003	BH4_2 domain-containing protein. (226 aa)
	ASZ78_004681	CARD domain-containing protein. (1070 aa)
	ASZ78_003546	BZIP domain-containing protein. (126 aa)
	ASZ78_015963	Uncharacterized protein. (600 aa)
	ASZ78_004975	Uncharacterized protein. (546 aa)
	ASZ78_010007	Serine/threonine-protein kinase TOR. (1379 aa)
	ASZ78_010702	Uncharacterized protein. (736 aa)
	ASZ78_008992	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (374 aa)
	ASZ78_008948	T-box_assoc domain-containing protein. (352 aa)
	ASZ78_006872	Interleukin; Belongs to the IL-15/IL-21 family. (170 aa)
	ASZ78_009435	Uncharacterized protein. (186 aa)
	ASZ78_009426	Ig-like domain-containing protein. (203 aa)
	ASZ78_000775	Uncharacterized protein. (479 aa)
	ASZ78_004809	Thyroglobulin type-1 domain-containing protein. (304 aa)
	ASZ78_008298	Uncharacterized protein. (280 aa)
	ASZ78_003846	Tyrosine-protein kinase. (577 aa)
	ASZ78_016322	MADS-box domain-containing protein. (437 aa)
	ASZ78_004530	Uncharacterized protein. (651 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000775	ASZ78_003546	A0A226MYX0	A0A226NH51	Uncharacterized protein.	BZIP domain-containing protein.	0.416
ASZ78_000775	ASZ78_003846	A0A226MYX0	A0A226MMG7	Uncharacterized protein.	Tyrosine-protein kinase.	0.936
ASZ78_000775	ASZ78_004681	A0A226MYX0	A0A226NIR8	Uncharacterized protein.	CARD domain-containing protein.	0.409
ASZ78_000775	ASZ78_004975	A0A226MYX0	A0A226NA23	Uncharacterized protein.	Uncharacterized protein.	0.732
ASZ78_000775	ASZ78_006003	A0A226MYX0	A0A226NIW8	Uncharacterized protein.	BH4_2 domain-containing protein.	0.668
ASZ78_000775	ASZ78_006872	A0A226MYX0	A0A226N5X6	Uncharacterized protein.	Interleukin; Belongs to the IL-15/IL-21 family.	0.851
ASZ78_000775	ASZ78_008298	A0A226MYX0	A0A226MNA1	Uncharacterized protein.	Uncharacterized protein.	0.919
ASZ78_000775	ASZ78_008948	A0A226MYX0	A0A226N7R3	Uncharacterized protein.	T-box_assoc domain-containing protein.	0.531
ASZ78_000775	ASZ78_008992	A0A226MYX0	A0A226N822	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.815
ASZ78_000775	ASZ78_009426	A0A226MYX0	A0A226N4X0	Uncharacterized protein.	Ig-like domain-containing protein.	0.747
ASZ78_000775	ASZ78_009435	A0A226MYX0	A0A226N537	Uncharacterized protein.	Uncharacterized protein.	0.912
ASZ78_000775	ASZ78_016680	A0A226MYX0	A0A226NM17	Uncharacterized protein.	Uncharacterized protein.	0.803
ASZ78_003546	ASZ78_000775	A0A226NH51	A0A226MYX0	BZIP domain-containing protein.	Uncharacterized protein.	0.416
ASZ78_003546	ASZ78_004975	A0A226NH51	A0A226NA23	BZIP domain-containing protein.	Uncharacterized protein.	0.488
ASZ78_003546	ASZ78_010702	A0A226NH51	A0A226N9Y8	BZIP domain-containing protein.	Uncharacterized protein.	0.531
ASZ78_003846	ASZ78_000775	A0A226MMG7	A0A226MYX0	Tyrosine-protein kinase.	Uncharacterized protein.	0.936
ASZ78_003846	ASZ78_004681	A0A226MMG7	A0A226NIR8	Tyrosine-protein kinase.	CARD domain-containing protein.	0.716
ASZ78_003846	ASZ78_009426	A0A226MMG7	A0A226N4X0	Tyrosine-protein kinase.	Ig-like domain-containing protein.	0.919
ASZ78_003846	ASZ78_009435	A0A226MMG7	A0A226N537	Tyrosine-protein kinase.	Uncharacterized protein.	0.992
ASZ78_003846	ASZ78_016680	A0A226MMG7	A0A226NM17	Tyrosine-protein kinase.	Uncharacterized protein.	0.531