(8 nodes) Positive regulation of alpha-beta T cell proliferation network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_003846	Tyrosine-protein kinase. (577 aa)
	IL12B	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (293 aa)
	ASZ78_007652	Interleukin-18. (196 aa)
	ASZ78_000315	Tyrosine-protein kinase. (403 aa)
	ASZ78_004681	CARD domain-containing protein. (1070 aa)
	ASZ78_008666	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (425 aa)
	ASZ78_016680	Uncharacterized protein. (924 aa)
	ASZ78_004872	Uncharacterized protein. (434 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000315	ASZ78_004681	A0A226N7Y8	A0A226NIR8	Tyrosine-protein kinase.	CARD domain-containing protein.	0.689
ASZ78_000315	ASZ78_016680	A0A226N7Y8	A0A226NM17	Tyrosine-protein kinase.	Uncharacterized protein.	0.475
ASZ78_003846	ASZ78_004681	A0A226MMG7	A0A226NIR8	Tyrosine-protein kinase.	CARD domain-containing protein.	0.716
ASZ78_003846	ASZ78_016680	A0A226MMG7	A0A226NM17	Tyrosine-protein kinase.	Uncharacterized protein.	0.531
ASZ78_004681	ASZ78_000315	A0A226NIR8	A0A226N7Y8	CARD domain-containing protein.	Tyrosine-protein kinase.	0.689
ASZ78_004681	ASZ78_003846	A0A226NIR8	A0A226MMG7	CARD domain-containing protein.	Tyrosine-protein kinase.	0.716
ASZ78_004681	ASZ78_004872	A0A226NIR8	A0A226NPV5	CARD domain-containing protein.	Uncharacterized protein.	0.643
ASZ78_004872	ASZ78_004681	A0A226NPV5	A0A226NIR8	Uncharacterized protein.	CARD domain-containing protein.	0.643
ASZ78_016680	ASZ78_000315	A0A226NM17	A0A226N7Y8	Uncharacterized protein.	Tyrosine-protein kinase.	0.475
ASZ78_016680	ASZ78_003846	A0A226NM17	A0A226MMG7	Uncharacterized protein.	Tyrosine-protein kinase.	0.531