(48 nodes) Positive regulation of synapse assembly network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_012334	Uncharacterized protein. (206 aa)
	ASZ78_016168	Uncharacterized protein. (266 aa)
	ASZ78_014591	Uncharacterized protein. (470 aa)
	ASZ78_013713	Uncharacterized protein. (857 aa)
	ASZ78_015514	Eukaryotic elongation factor 2 kinase. (705 aa)
	ASZ78_014332	Motilin_assoc domain-containing protein. (81 aa)
	ASZ78_001756	Uncharacterized protein; Belongs to the semaphorin family. (602 aa)
	ASZ78_016958	Ig-like domain-containing protein. (492 aa)
	ASZ78_001757	Sema domain-containing protein. (106 aa)
	ASZ78_014673	Uncharacterized protein. (986 aa)
	ASZ78_000921	Uncharacterized protein. (885 aa)
	ASZ78_006842	Uncharacterized protein. (692 aa)
	ASZ78_005027	Uncharacterized protein. (837 aa)
	ASZ78_004373	Uncharacterized protein. (198 aa)
	ASZ78_014473	Uncharacterized protein. (135 aa)
	ASZ78_001133	Uncharacterized protein. (635 aa)
	ASZ78_010970	Fibronectin type-III domain-containing protein. (647 aa)
	ASZ78_000761	Uncharacterized protein. (1002 aa)
	ASZ78_006105	Uncharacterized protein. (359 aa)
	ASZ78_001276	NtA domain-containing protein. (181 aa)
	ASZ78_001337	Uncharacterized protein. (455 aa)
	ASZ78_001274	Uncharacterized protein. (1876 aa)
	ASZ78_005914	Uncharacterized protein. (355 aa)
	ASZ78_016921	Ig-like domain-containing protein. (521 aa)
	ASZ78_000104	Uncharacterized protein. (953 aa)
	ASZ78_000103	Uncharacterized protein. (840 aa)
	ASZ78_006171	Uncharacterized protein. (493 aa)
	ASZ78_014869	Uncharacterized protein. (707 aa)
	ASZ78_010531	Uncharacterized protein. (702 aa)
	ASZ78_000994	Uncharacterized protein. (585 aa)
	ASZ78_012333	LRRCT domain-containing protein. (491 aa)
	ASZ78_003190	Uncharacterized protein. (1215 aa)
	ASZ78_009373	Sema domain-containing protein; Belongs to the semaphorin family. (781 aa)
	ASZ78_006395	TIR domain-containing protein. (213 aa)
	ASZ78_006394	Uncharacterized protein. (560 aa)
	ASZ78_013266	Ig-like domain-containing protein. (558 aa)
	ASZ78_002082	Homeobox protein cut-like. (1519 aa)
	ASZ78_001051	Uncharacterized protein. (436 aa)
	ASZ78_007378	Uncharacterized protein. (503 aa)
	ASZ78_001801	Uncharacterized protein; Belongs to the MAGUK family. (1887 aa)
	ASZ78_013833	Uncharacterized protein. (470 aa)
	ASZ78_001591	Uncharacterized protein. (809 aa)
	ASZ78_002354	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1438 aa)
	ASZ78_015827	Ig-like domain-containing protein. (696 aa)
	ASZ78_015864	Ig-like domain-containing protein. (491 aa)
	ASZ78_010334	C1q domain-containing protein. (194 aa)
	ASZ78_001281	C1q domain-containing protein. (212 aa)
	ASZ78_015313	Uncharacterized protein. (261 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000103	ASZ78_002354	A0A226N2E8	A0A226NH93	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.772
ASZ78_000104	ASZ78_002354	A0A226N2E5	A0A226NH93	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.772
ASZ78_000761	ASZ78_001337	A0A226MZE3	A0A226N0H5	Uncharacterized protein.	Uncharacterized protein.	0.576
ASZ78_000994	ASZ78_002354	A0A226N3G6	A0A226NH93	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.780
ASZ78_001051	ASZ78_006171	A0A226N9J3	A0A226N2V1	Uncharacterized protein.	Uncharacterized protein.	0.503
ASZ78_001051	ASZ78_006842	A0A226N9J3	A0A226MNL7	Uncharacterized protein.	Uncharacterized protein.	0.678
ASZ78_001051	ASZ78_012333	A0A226N9J3	A0A226N3W0	Uncharacterized protein.	LRRCT domain-containing protein.	0.655
ASZ78_001051	ASZ78_013713	A0A226N9J3	A0A226MFQ6	Uncharacterized protein.	Uncharacterized protein.	0.655
ASZ78_001051	ASZ78_014473	A0A226N9J3	A0A226MWV7	Uncharacterized protein.	Uncharacterized protein.	0.406
ASZ78_001133	ASZ78_002354	A0A226MX99	A0A226NH93	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.860
ASZ78_001133	ASZ78_014473	A0A226MX99	A0A226MWV7	Uncharacterized protein.	Uncharacterized protein.	0.409
ASZ78_001274	ASZ78_001276	A0A226N186	A0A226N0F0	Uncharacterized protein.	NtA domain-containing protein.	0.899
ASZ78_001276	ASZ78_001274	A0A226N0F0	A0A226N186	NtA domain-containing protein.	Uncharacterized protein.	0.899
ASZ78_001337	ASZ78_000761	A0A226N0H5	A0A226MZE3	Uncharacterized protein.	Uncharacterized protein.	0.576
ASZ78_001337	ASZ78_002354	A0A226N0H5	A0A226NH93	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.772
ASZ78_001337	ASZ78_010334	A0A226N0H5	A0A226NJW2	Uncharacterized protein.	C1q domain-containing protein.	0.531
ASZ78_001337	ASZ78_014473	A0A226N0H5	A0A226MWV7	Uncharacterized protein.	Uncharacterized protein.	0.815
ASZ78_001756	ASZ78_001757	A0A226MM78	A0A226MMT6	Uncharacterized protein; Belongs to the semaphorin family.	Sema domain-containing protein.	0.429
ASZ78_001757	ASZ78_001756	A0A226MMT6	A0A226MM78	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.429
ASZ78_001801	ASZ78_014473	A0A226NBY7	A0A226MWV7	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.499