(21 nodes) Long-term synaptic potentiation network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_007378	Uncharacterized protein. (503 aa)
	ASZ78_001202	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (465 aa)
	ASZ78_001201	NMDAR2_C domain-containing protein. (713 aa)
	ASZ78_012082	Uncharacterized protein. (903 aa)
	ASZ78_007849	Uncharacterized protein. (168 aa)
	ASZ78_007850	ANK_REP_REGION domain-containing protein. (74 aa)
	ASZ78_016476	Uncharacterized protein. (411 aa)
	ASZ78_003447	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (581 aa)
	ASZ78_010357	Uncharacterized protein. (1069 aa)
	ASZ78_005735	Uncharacterized protein. (183 aa)
	ASZ78_005737	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1336 aa)
	ASZ78_014131	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (123 aa)
	ASZ78_001850	t-SNARE coiled-coil homology domain-containing protein. (438 aa)
	ASZ78_010077	C2 domain-containing protein. (341 aa)
	ASZ78_013279	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (691 aa)
	ASZ78_006526	Uncharacterized protein. (953 aa)
	ASZ78_001337	Uncharacterized protein. (455 aa)
	ASZ78_006448	Uncharacterized protein. (1290 aa)
	ASZ78_003942	IF rod domain-containing protein; Belongs to the intermediate filament family. (383 aa)
	ASZ78_001417	SERPIN domain-containing protein; Belongs to the serpin family. (435 aa)
	ASZ78_005984	Noggin; Belongs to the noggin family. (223 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001201	ASZ78_001202	A0A226MYG5	A0A226MYG0	NMDAR2_C domain-containing protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.870
ASZ78_001201	ASZ78_005735	A0A226MYG5	A0A226NJ08	NMDAR2_C domain-containing protein.	Uncharacterized protein.	0.958
ASZ78_001201	ASZ78_005737	A0A226MYG5	A0A226NIP3	NMDAR2_C domain-containing protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.928
ASZ78_001201	ASZ78_006448	A0A226MYG5	A0A226MLU0	NMDAR2_C domain-containing protein.	Uncharacterized protein.	0.783
ASZ78_001202	ASZ78_001201	A0A226MYG0	A0A226MYG5	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	NMDAR2_C domain-containing protein.	0.870
ASZ78_001202	ASZ78_005735	A0A226MYG0	A0A226NJ08	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.991
ASZ78_001202	ASZ78_005737	A0A226MYG0	A0A226NIP3	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.928
ASZ78_001202	ASZ78_006448	A0A226MYG0	A0A226MLU0	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.785
ASZ78_001850	ASZ78_010077	A0A226ND95	A0A226MW63	t-SNARE coiled-coil homology domain-containing protein.	C2 domain-containing protein.	0.453
ASZ78_001850	ASZ78_014131	A0A226ND95	A0A226NDP5	t-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.607
ASZ78_003942	ASZ78_014131	A0A226MN19	A0A226NDP5	IF rod domain-containing protein; Belongs to the intermediate filament family.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.550
ASZ78_005735	ASZ78_001201	A0A226NJ08	A0A226MYG5	Uncharacterized protein.	NMDAR2_C domain-containing protein.	0.958
ASZ78_005735	ASZ78_001202	A0A226NJ08	A0A226MYG0	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.991
ASZ78_005735	ASZ78_005737	A0A226NJ08	A0A226NIP3	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.894
ASZ78_005735	ASZ78_006448	A0A226NJ08	A0A226MLU0	Uncharacterized protein.	Uncharacterized protein.	0.938
ASZ78_005737	ASZ78_001201	A0A226NIP3	A0A226MYG5	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	NMDAR2_C domain-containing protein.	0.928
ASZ78_005737	ASZ78_001202	A0A226NIP3	A0A226MYG0	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.928
ASZ78_005737	ASZ78_005735	A0A226NIP3	A0A226NJ08	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.894
ASZ78_005737	ASZ78_006448	A0A226NIP3	A0A226MLU0	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.958
ASZ78_006448	ASZ78_001201	A0A226MLU0	A0A226MYG5	Uncharacterized protein.	NMDAR2_C domain-containing protein.	0.783