(43 nodes) Cellular response to amino acid stimulus network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_010456	Uncharacterized protein. (615 aa)
	ASZ78_003923	Uncharacterized protein. (271 aa)
	ASZ78_004732	Uncharacterized protein. (356 aa)
	ASZ78_016958	Ig-like domain-containing protein. (492 aa)
	ASZ78_000735	Uncharacterized protein. (464 aa)
	ASZ78_005112	Uncharacterized protein. (95 aa)
	ASZ78_015258	Uncharacterized protein; Belongs to the peptidase C2 family. (725 aa)
	ASZ78_014137	Uncharacterized protein. (780 aa)
	ASZ78_006616	Uncharacterized protein. (453 aa)
	ASZ78_005729	Uncharacterized protein. (207 aa)
	ASZ78_005488	BH4_2 domain-containing protein. (229 aa)
	ASZ78_010952	Uncharacterized protein. (482 aa)
	ASZ78_015854	Uncharacterized protein. (58 aa)
	ASZ78_011963	Uncharacterized protein. (406 aa)
	ASZ78_011600	Uncharacterized protein. (519 aa)
	ASZ78_011580	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (175 aa)
	ASZ78_008589	Uncharacterized protein. (328 aa)
	ASZ78_008327	Uncharacterized protein. (315 aa)
	ASZ78_008326	Uncharacterized protein. (203 aa)
	ASZ78_008748	BTB domain-containing protein. (638 aa)
	ASZ78_016310	Uncharacterized protein. (312 aa)
	ASZ78_008780	Uncharacterized protein. (247 aa)
	ASZ78_010007	Serine/threonine-protein kinase TOR. (1379 aa)
	ASZ78_002987	Uncharacterized protein. (680 aa)
	ASZ78_001935	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1436 aa)
	ASZ78_016244	Uncharacterized protein. (636 aa)
	ASZ78_013801	Uncharacterized protein. (135 aa)
	ASZ78_002626	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1149 aa)
	ASZ78_016921	Ig-like domain-containing protein. (521 aa)
	ASZ78_003770	Uncharacterized protein. (295 aa)
	ASZ78_011077	Uncharacterized protein. (325 aa)
	ASZ78_011182	Uncharacterized protein. (124 aa)
	ASZ78_005724	Uncharacterized protein. (965 aa)
	ASZ78_009145	tRNA-synt_1 domain-containing protein. (565 aa)
	ASZ78_006191	Uncharacterized protein. (425 aa)
	ASZ78_011045	Uncharacterized protein. (315 aa)
	ASZ78_017087	CCAAT/enhancer-binding protein. (279 aa)
	ASZ78_013484	WD_REPEATS_REGION domain-containing protein. (1333 aa)
	ASZ78_001066	Uncharacterized protein. (325 aa)
	ASZ78_013485	Uncharacterized protein. (573 aa)
	ASZ78_016102	RRM domain-containing protein. (441 aa)
	ASZ78_004364	Uncharacterized protein. (461 aa)
	ASZ78_016852	Uncharacterized protein. (456 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000735	ASZ78_005724	A0A226MKG0	A0A226MF60	Uncharacterized protein.	Uncharacterized protein.	0.565
ASZ78_000735	ASZ78_010007	A0A226MKG0	A0A226NA13	Uncharacterized protein.	Serine/threonine-protein kinase TOR.	0.737
ASZ78_000735	ASZ78_011045	A0A226MKG0	A0A226MGF3	Uncharacterized protein.	Uncharacterized protein.	0.912
ASZ78_000735	ASZ78_011182	A0A226MKG0	A0A226MWF2	Uncharacterized protein.	Uncharacterized protein.	0.998
ASZ78_000735	ASZ78_011963	A0A226MKG0	A0A226NGT4	Uncharacterized protein.	Uncharacterized protein.	0.912
ASZ78_000735	ASZ78_013484	A0A226MKG0	A0A226MHJ7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.688
ASZ78_000735	ASZ78_013801	A0A226MKG0	A0A226N4K8	Uncharacterized protein.	Uncharacterized protein.	0.998
ASZ78_000735	ASZ78_015854	A0A226MKG0	A0A226NHQ8	Uncharacterized protein.	Uncharacterized protein.	0.997
ASZ78_000735	ASZ78_016310	A0A226MKG0	A0A226NAZ6	Uncharacterized protein.	Uncharacterized protein.	0.468
ASZ78_000735	ASZ78_016852	A0A226MKG0	A0A226MU62	Uncharacterized protein.	Uncharacterized protein.	0.976
ASZ78_001935	ASZ78_002626	A0A226N7V8	A0A226N363	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.473
ASZ78_002626	ASZ78_001935	A0A226N363	A0A226N7V8	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.473
ASZ78_003770	ASZ78_010952	A0A226N1K8	A0A226NIL7	Uncharacterized protein.	Uncharacterized protein.	0.710
ASZ78_003770	ASZ78_016102	A0A226N1K8	A0A226MVQ2	Uncharacterized protein.	RRM domain-containing protein.	0.839
ASZ78_003923	ASZ78_016244	A0A226MRM5	A0A226N6G6	Uncharacterized protein.	Uncharacterized protein.	0.998
ASZ78_004364	ASZ78_006191	A0A226MV06	A0A226MGA6	Uncharacterized protein.	Uncharacterized protein.	0.807
ASZ78_004364	ASZ78_006616	A0A226MV06	A0A226NKP2	Uncharacterized protein.	Uncharacterized protein.	0.979
ASZ78_004364	ASZ78_010007	A0A226MV06	A0A226NA13	Uncharacterized protein.	Serine/threonine-protein kinase TOR.	0.469
ASZ78_004364	ASZ78_011045	A0A226MV06	A0A226MGF3	Uncharacterized protein.	Uncharacterized protein.	0.499
ASZ78_004364	ASZ78_011077	A0A226MV06	A0A226MY61	Uncharacterized protein.	Uncharacterized protein.	0.912