(8 nodes) Lipopeptide binding network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_005824	Uncharacterized protein. (675 aa)
	ASZ78_014220	Ig-like domain-containing protein. (343 aa)
	ASZ78_013317	TIR domain-containing protein; Belongs to the Toll-like receptor family. (776 aa)
	ASZ78_003088	TIR domain-containing protein. (726 aa)
	ASZ78_007905	Uncharacterized protein. (145 aa)
	ASZ78_007906	Uncharacterized protein. (233 aa)
	ASZ78_005609	TIR domain-containing protein; Belongs to the Toll-like receptor family. (818 aa)
	ASZ78_005610	TIR domain-containing protein. (397 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_003088	ASZ78_005609	A0A226MI42	A0A226NKC0	TIR domain-containing protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.595
ASZ78_003088	ASZ78_005610	A0A226MI42	A0A226NKH4	TIR domain-containing protein.	TIR domain-containing protein.	0.565
ASZ78_003088	ASZ78_007905	A0A226MI42	A0A226MY88	TIR domain-containing protein.	Uncharacterized protein.	0.634
ASZ78_003088	ASZ78_007906	A0A226MI42	A0A226MYA7	TIR domain-containing protein.	Uncharacterized protein.	0.634
ASZ78_003088	ASZ78_013317	A0A226MI42	A0A226MEV2	TIR domain-containing protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.590
ASZ78_005609	ASZ78_003088	A0A226NKC0	A0A226MI42	TIR domain-containing protein; Belongs to the Toll-like receptor family.	TIR domain-containing protein.	0.595
ASZ78_005609	ASZ78_007905	A0A226NKC0	A0A226MY88	TIR domain-containing protein; Belongs to the Toll-like receptor family.	Uncharacterized protein.	0.653
ASZ78_005609	ASZ78_007906	A0A226NKC0	A0A226MYA7	TIR domain-containing protein; Belongs to the Toll-like receptor family.	Uncharacterized protein.	0.653
ASZ78_005610	ASZ78_003088	A0A226NKH4	A0A226MI42	TIR domain-containing protein.	TIR domain-containing protein.	0.565
ASZ78_005610	ASZ78_007905	A0A226NKH4	A0A226MY88	TIR domain-containing protein.	Uncharacterized protein.	0.634
ASZ78_005610	ASZ78_007906	A0A226NKH4	A0A226MYA7	TIR domain-containing protein.	Uncharacterized protein.	0.634
ASZ78_007905	ASZ78_003088	A0A226MY88	A0A226MI42	Uncharacterized protein.	TIR domain-containing protein.	0.634
ASZ78_007905	ASZ78_005609	A0A226MY88	A0A226NKC0	Uncharacterized protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.653
ASZ78_007905	ASZ78_005610	A0A226MY88	A0A226NKH4	Uncharacterized protein.	TIR domain-containing protein.	0.634
ASZ78_007905	ASZ78_007906	A0A226MY88	A0A226MYA7	Uncharacterized protein.	Uncharacterized protein.	0.821
ASZ78_007905	ASZ78_013317	A0A226MY88	A0A226MEV2	Uncharacterized protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.634
ASZ78_007906	ASZ78_003088	A0A226MYA7	A0A226MI42	Uncharacterized protein.	TIR domain-containing protein.	0.634
ASZ78_007906	ASZ78_005609	A0A226MYA7	A0A226NKC0	Uncharacterized protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.653
ASZ78_007906	ASZ78_005610	A0A226MYA7	A0A226NKH4	Uncharacterized protein.	TIR domain-containing protein.	0.634
ASZ78_007906	ASZ78_007905	A0A226MYA7	A0A226MY88	Uncharacterized protein.	Uncharacterized protein.	0.821