(20 nodes) Regulation of cell migration involved in sprouting angiogenesis network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_001705	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1220 aa)
	ASZ78_013758	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (113 aa)
	ASZ78_001882	Homeobox domain-containing protein. (207 aa)
	ASZ78_004352	G_PROTEIN_RECEP_F1_2 domain-containing protein. (156 aa)
	ASZ78_013606	Annexin. (308 aa)
	ASZ78_010759	Uncharacterized protein. (615 aa)
	ASZ78_004221	Uncharacterized protein. (320 aa)
	ASZ78_008097	G_PROTEIN_RECEP_F1_2 domain-containing protein. (364 aa)
	ASZ78_005234	Uncharacterized protein. (658 aa)
	ASZ78_014441	CARD domain-containing protein. (846 aa)
	ASZ78_008444	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (691 aa)
	ASZ78_013051	Uncharacterized protein. (1315 aa)
	ASZ78_012326	Uncharacterized protein. (212 aa)
	ASZ78_013183	PID domain-containing protein. (200 aa)
	ASZ78_008019	Uncharacterized protein. (245 aa)
	ASZ78_016218	Uncharacterized protein. (678 aa)
	ASZ78_015446	Uncharacterized protein. (1071 aa)
	ASZ78_015461	Uncharacterized protein. (456 aa)
	ASZ78_003328	Uncharacterized protein. (1014 aa)
	ASZ78_013850	Uncharacterized protein. (744 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001705	ASZ78_008444	A0A226MHK7	A0A226N1G3	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.625
ASZ78_001705	ASZ78_013758	A0A226MHK7	A0A226MMR5	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.987
ASZ78_001705	ASZ78_015446	A0A226MHK7	A0A226NDS1	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.518
ASZ78_004221	ASZ78_013758	A0A226MVY3	A0A226MMR5	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.491
ASZ78_004352	ASZ78_005234	A0A226M550	A0A226MZN1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.969
ASZ78_004352	ASZ78_016218	A0A226M550	A0A226N8J4	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.969
ASZ78_005234	ASZ78_004352	A0A226MZN1	A0A226M550	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.969
ASZ78_005234	ASZ78_016218	A0A226MZN1	A0A226N8J4	Uncharacterized protein.	Uncharacterized protein.	0.917
ASZ78_008444	ASZ78_001705	A0A226N1G3	A0A226MHK7	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.625
ASZ78_008444	ASZ78_010759	A0A226N1G3	A0A226MVL2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Uncharacterized protein.	0.409
ASZ78_008444	ASZ78_013758	A0A226N1G3	A0A226MMR5	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.430
ASZ78_010759	ASZ78_008444	A0A226MVL2	A0A226N1G3	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.409
ASZ78_010759	ASZ78_013850	A0A226MVL2	A0A226MGJ0	Uncharacterized protein.	Uncharacterized protein.	0.916
ASZ78_012326	ASZ78_013183	A0A226N456	A0A226N4S0	Uncharacterized protein.	PID domain-containing protein.	0.502
ASZ78_013183	ASZ78_012326	A0A226N4S0	A0A226N456	PID domain-containing protein.	Uncharacterized protein.	0.502
ASZ78_013758	ASZ78_001705	A0A226MMR5	A0A226MHK7	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.987
ASZ78_013758	ASZ78_004221	A0A226MMR5	A0A226MVY3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.491
ASZ78_013758	ASZ78_008444	A0A226MMR5	A0A226N1G3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.430
ASZ78_013758	ASZ78_015446	A0A226MMR5	A0A226NDS1	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.575
ASZ78_013850	ASZ78_010759	A0A226MGJ0	A0A226MVL2	Uncharacterized protein.	Uncharacterized protein.	0.916