(5 nodes) Postsynaptic density assembly network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_012082	Uncharacterized protein. (903 aa)
	ASZ78_007849	Uncharacterized protein. (168 aa)
	ASZ78_007850	ANK_REP_REGION domain-containing protein. (74 aa)
	ASZ78_014473	Uncharacterized protein. (135 aa)
	ASZ78_009600	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (258 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_007849	ASZ78_007850	A0A226MJ52	A0A226MJ80	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.965
ASZ78_007849	ASZ78_012082	A0A226MJ52	A0A226MD03	Uncharacterized protein.	Uncharacterized protein.	0.770
ASZ78_007849	ASZ78_014473	A0A226MJ52	A0A226MWV7	Uncharacterized protein.	Uncharacterized protein.	0.613
ASZ78_007850	ASZ78_007849	A0A226MJ80	A0A226MJ52	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.965
ASZ78_007850	ASZ78_012082	A0A226MJ80	A0A226MD03	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.960
ASZ78_007850	ASZ78_014473	A0A226MJ80	A0A226MWV7	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.613
ASZ78_012082	ASZ78_007849	A0A226MD03	A0A226MJ52	Uncharacterized protein.	Uncharacterized protein.	0.770
ASZ78_012082	ASZ78_007850	A0A226MD03	A0A226MJ80	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.960
ASZ78_012082	ASZ78_014473	A0A226MD03	A0A226MWV7	Uncharacterized protein.	Uncharacterized protein.	0.613
ASZ78_014473	ASZ78_007849	A0A226MWV7	A0A226MJ52	Uncharacterized protein.	Uncharacterized protein.	0.613
ASZ78_014473	ASZ78_007850	A0A226MWV7	A0A226MJ80	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.613
ASZ78_014473	ASZ78_012082	A0A226MWV7	A0A226MD03	Uncharacterized protein.	Uncharacterized protein.	0.613