(9 nodes) Maintenance of synapse structure network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_006526	Uncharacterized protein. (953 aa)
	ASZ78_003365	C2 domain-containing protein. (375 aa)
	ASZ78_016951	Uncharacterized protein. (3082 aa)
	ASZ78_007850	ANK_REP_REGION domain-containing protein. (74 aa)
	ASZ78_007849	Uncharacterized protein. (168 aa)
	ASZ78_002830	C1q domain-containing protein. (198 aa)
	ASZ78_012082	Uncharacterized protein. (903 aa)
	ASZ78_001281	C1q domain-containing protein. (212 aa)
	ASZ78_010334	C1q domain-containing protein. (194 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_003365	ASZ78_016951	A0A226N661	A0A226MLL1	C2 domain-containing protein.	Uncharacterized protein.	0.693
ASZ78_006526	ASZ78_007849	A0A226N6T0	A0A226MJ52	Uncharacterized protein.	Uncharacterized protein.	0.918
ASZ78_006526	ASZ78_007850	A0A226N6T0	A0A226MJ80	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.974
ASZ78_006526	ASZ78_012082	A0A226N6T0	A0A226MD03	Uncharacterized protein.	Uncharacterized protein.	0.764
ASZ78_007849	ASZ78_006526	A0A226MJ52	A0A226N6T0	Uncharacterized protein.	Uncharacterized protein.	0.918
ASZ78_007849	ASZ78_007850	A0A226MJ52	A0A226MJ80	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.965
ASZ78_007849	ASZ78_012082	A0A226MJ52	A0A226MD03	Uncharacterized protein.	Uncharacterized protein.	0.770
ASZ78_007850	ASZ78_006526	A0A226MJ80	A0A226N6T0	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.974
ASZ78_007850	ASZ78_007849	A0A226MJ80	A0A226MJ52	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.965
ASZ78_007850	ASZ78_012082	A0A226MJ80	A0A226MD03	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.960
ASZ78_012082	ASZ78_006526	A0A226MD03	A0A226N6T0	Uncharacterized protein.	Uncharacterized protein.	0.764
ASZ78_012082	ASZ78_007849	A0A226MD03	A0A226MJ52	Uncharacterized protein.	Uncharacterized protein.	0.770
ASZ78_012082	ASZ78_007850	A0A226MD03	A0A226MJ80	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.960
ASZ78_016951	ASZ78_003365	A0A226MLL1	A0A226N661	Uncharacterized protein.	C2 domain-containing protein.	0.693