(125 nodes) Modification-dependent protein binding network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_001464	Chromo domain-containing protein. (170 aa)
	ASZ78_009525	Uncharacterized protein. (698 aa)
	ASZ78_015691	Uncharacterized protein. (227 aa)
	ASZ78_002265	JmjC domain-containing protein. (392 aa)
	ASZ78_015693	WD_REPEATS_REGION domain-containing protein. (602 aa)
	ASZ78_015746	Uncharacterized protein. (907 aa)
	ASZ78_010058	Uncharacterized protein. (789 aa)
	ASZ78_014252	Uncharacterized protein. (2146 aa)
	ASZ78_002794	Uncharacterized protein. (985 aa)
	ASZ78_016753	Uncharacterized protein. (2456 aa)
	ASZ78_010955	Uncharacterized protein; Belongs to the peptidase M16 family. (1065 aa)
	ASZ78_017047	Uncharacterized protein. (467 aa)
	ASZ78_005673	PHD-type domain-containing protein. (547 aa)
	ASZ78_015825	Uncharacterized protein. (721 aa)
	ASZ78_010727	CUE domain-containing protein. (697 aa)
	ASZ78_002341	ZZ-type domain-containing protein. (377 aa)
	ASZ78_002342	Uncharacterized protein. (505 aa)
	ASZ78_005719	Tyrosine-protein kinase. (514 aa)
	ASZ78_000686	SET domain-containing protein. (1306 aa)
	ASZ78_012973	Uncharacterized protein. (1107 aa)
	ASZ78_016053	Uncharacterized protein. (1243 aa)
	ASZ78_004446	Cnd1 domain-containing protein. (1290 aa)
	ASZ78_016055	WD_REPEATS_REGION domain-containing protein. (200 aa)
	ASZ78_016056	WD_REPEATS_REGION domain-containing protein. (207 aa)
	ASZ78_014622	Uncharacterized protein. (505 aa)
	ASZ78_014610	Uncharacterized protein. (387 aa)
	ASZ78_014613	Uncharacterized protein. (882 aa)
	ASZ78_016982	JmjC domain-containing protein. (1082 aa)
	ASZ78_001554	ING domain-containing protein. (227 aa)
	ASZ78_001568	RING-type domain-containing protein. (575 aa)
	ASZ78_006575	Uncharacterized protein. (3105 aa)
	ASZ78_016290	Uncharacterized protein. (2829 aa)
	ASZ78_016270	Uncharacterized protein. (716 aa)
	ASZ78_001057	Uncharacterized protein. (679 aa)
	ASZ78_009920	Uncharacterized protein; Belongs to the AAA ATPase family. (826 aa)
	ASZ78_008933	Uncharacterized protein. (138 aa)
	ASZ78_006975	Inhibitor of growth protein. (409 aa)
	ASZ78_014971	Uncharacterized protein. (708 aa)
	ASZ78_016347	Uncharacterized protein. (496 aa)
	ASZ78_014974	MPN domain-containing protein. (414 aa)
	ASZ78_008008	53-BP1_Tudor domain-containing protein. (1553 aa)
	ASZ78_000883	Bromo domain-containing protein. (650 aa)
	ASZ78_008009	BRCT domain-containing protein. (103 aa)
	ASZ78_003058	Uncharacterized protein. (507 aa)
	ASZ78_009378	Uncharacterized protein. (262 aa)
	ASZ78_008144	Uncharacterized protein. (597 aa)
	ASZ78_015362	Uncharacterized protein. (376 aa)
	ASZ78_012063	PHD-type domain-containing protein. (418 aa)
	ASZ78_015355	ANK_REP_REGION domain-containing protein. (645 aa)
	ASZ78_001008	Uncharacterized protein. (495 aa)
	ASZ78_002319	Uncharacterized protein. (679 aa)
	ASZ78_016152	GSAP-16 domain-containing protein. (545 aa)
	ASZ78_016139	Uncharacterized protein. (614 aa)
	ASZ78_015017	Uncharacterized protein. (1107 aa)
	ASZ78_013637	Chromo domain-containing protein. (521 aa)
	ASZ78_013640	Chromo domain-containing protein. (506 aa)
	ASZ78_013638	Uncharacterized protein. (326 aa)
	ASZ78_014398	Chromo domain-containing protein. (244 aa)
	ASZ78_001077	Uncharacterized protein. (176 aa)
	ASZ78_000781	Uncharacterized protein. (738 aa)
	ASZ78_009213	Uncharacterized protein. (567 aa)
	ASZ78_007457	Inhibitor of growth protein. (281 aa)
	ASZ78_000763	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (605 aa)
	ASZ78_004399	Uncharacterized protein. (276 aa)
	ASZ78_013026	MINDY_DUB domain-containing protein. (340 aa)
	ASZ78_009323	Uncharacterized protein. (344 aa)
	ASZ78_008906	Uncharacterized protein. (711 aa)
	ASZ78_012099	Uncharacterized protein. (1652 aa)
	ASZ78_012481	Uncharacterized protein. (158 aa)
	ASZ78_004499	ANK_REP_REGION domain-containing protein. (591 aa)
	ASZ78_009712	FCS-type domain-containing protein. (663 aa)
	ASZ78_004786	Uncharacterized protein. (452 aa)
	ASZ78_015979	PWWP domain-containing protein. (536 aa)
	ASZ78_001120	Uncharacterized protein. (539 aa)
	ASZ78_005978	VEFS-Box domain-containing protein. (619 aa)
	ASZ78_012525	Uncharacterized protein. (1913 aa)
	ASZ78_006943	Uncharacterized protein. (459 aa)
	ASZ78_012520	MPN domain-containing protein. (2347 aa)
	ASZ78_000055	RAG2_PHD domain-containing protein. (560 aa)
	ASZ78_000858	PWWP domain-containing protein. (786 aa)
	ASZ78_003910	Mtf2_C domain-containing protein. (452 aa)
	ASZ78_003902	Uncharacterized protein. (661 aa)
	ASZ78_008276	Uncharacterized protein. (447 aa)
	ASZ78_008875	Inhibitor of growth protein. (279 aa)
	ASZ78_010119	ANK_REP_REGION domain-containing protein. (626 aa)
	ASZ78_015951	Uncharacterized protein. (1739 aa)
	ASZ78_007262	JmjC domain-containing protein. (315 aa)
	ASZ78_014599	Uncharacterized protein. (137 aa)
	ASZ78_008293	Uncharacterized protein. (117 aa)
	ASZ78_000013	CCHC NOA-type domain-containing protein. (397 aa)
	ASZ78_009645	SET domain-containing protein. (1121 aa)
	ASZ78_007156	MINDY_DUB domain-containing protein. (462 aa)
	ASZ78_007149	VWFA domain-containing protein. (376 aa)
	ASZ78_015637	Uncharacterized protein. (139 aa)
	ASZ78_009196	Uncharacterized protein. (677 aa)
	ASZ78_009197	Uncharacterized protein. (241 aa)
	ASZ78_009205	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (905 aa)
	ASZ78_001075	MPN domain-containing protein. (405 aa)
	ASZ78_010866	Uncharacterized protein. (400 aa)
	ASZ78_003090	Uncharacterized protein. (1660 aa)
	ASZ78_009871	Uncharacterized protein. (568 aa)
	ASZ78_012300	UBA domain-containing protein. (446 aa)
	ASZ78_002380	Uncharacterized protein. (541 aa)
	ASZ78_004358	FCS-type domain-containing protein. (724 aa)
	ASZ78_013842	STI1 domain-containing protein. (392 aa)
	ASZ78_013854	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (87 aa)
	ASZ78_008647	SGF29 C-terminal domain-containing protein. (113 aa)
	ASZ78_011666	Bromo domain-containing protein. (615 aa)
	ASZ78_013353	Uncharacterized protein. (338 aa)
	ASZ78_003395	Uncharacterized protein. (1342 aa)
	ASZ78_000819	MPN domain-containing protein. (279 aa)
	ASZ78_005785	Uncharacterized protein. (473 aa)
	ASZ78_016508	Uncharacterized protein. (796 aa)
	ASZ78_003341	SAM domain-containing protein. (832 aa)
	ASZ78_013371	Uncharacterized protein. (988 aa)
	ASZ78_016694	Uncharacterized protein. (228 aa)
	ASZ78_002397	Uncharacterized protein. (412 aa)
	ASZ78_002865	Uncharacterized protein; Belongs to the AAA ATPase family. (580 aa)
	ASZ78_005757	Uncharacterized protein. (698 aa)
	ASZ78_005758	Uncharacterized protein. (83 aa)
	ASZ78_006352	Uncharacterized protein. (641 aa)
	ASZ78_002932	THAP-type domain-containing protein. (219 aa)
	ASZ78_013818	Bromo domain-containing protein. (209 aa)
	ASZ78_002146	zf-CpG_bind_C domain-containing protein. (99 aa)
	ASZ78_015236	Chromo domain-containing protein. (82 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000013	ASZ78_002397	A0A226MM14	A0A226MD41	CCHC NOA-type domain-containing protein.	Uncharacterized protein.	0.407
ASZ78_000013	ASZ78_005785	A0A226MM14	A0A226MEI1	CCHC NOA-type domain-containing protein.	Uncharacterized protein.	0.407
ASZ78_000013	ASZ78_008144	A0A226MM14	A0A226N4I1	CCHC NOA-type domain-containing protein.	Uncharacterized protein.	0.407
ASZ78_000013	ASZ78_010058	A0A226MM14	A0A226NM61	CCHC NOA-type domain-containing protein.	Uncharacterized protein.	0.939
ASZ78_000013	ASZ78_010866	A0A226MM14	A0A226MIT1	CCHC NOA-type domain-containing protein.	Uncharacterized protein.	0.407
ASZ78_000013	ASZ78_013842	A0A226MM14	A0A226MGI3	CCHC NOA-type domain-containing protein.	STI1 domain-containing protein.	0.407
ASZ78_000013	ASZ78_014610	A0A226MM14	A0A226NDL8	CCHC NOA-type domain-containing protein.	Uncharacterized protein.	0.407
ASZ78_000686	ASZ78_002397	A0A226NFE9	A0A226MD41	SET domain-containing protein.	Uncharacterized protein.	0.418
ASZ78_000686	ASZ78_003090	A0A226NFE9	A0A226MIF3	SET domain-containing protein.	Uncharacterized protein.	0.436
ASZ78_000686	ASZ78_005785	A0A226NFE9	A0A226MEI1	SET domain-containing protein.	Uncharacterized protein.	0.418
ASZ78_000686	ASZ78_008144	A0A226NFE9	A0A226N4I1	SET domain-containing protein.	Uncharacterized protein.	0.418
ASZ78_000686	ASZ78_009645	A0A226NFE9	A0A226MLY5	SET domain-containing protein.	SET domain-containing protein.	0.411
ASZ78_000686	ASZ78_010866	A0A226NFE9	A0A226MIT1	SET domain-containing protein.	Uncharacterized protein.	0.418
ASZ78_000686	ASZ78_013842	A0A226NFE9	A0A226MGI3	SET domain-containing protein.	STI1 domain-containing protein.	0.418
ASZ78_000686	ASZ78_014610	A0A226NFE9	A0A226NDL8	SET domain-containing protein.	Uncharacterized protein.	0.418
ASZ78_000763	ASZ78_005719	A0A226MYZ6	A0A226NGR7	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.818
ASZ78_000763	ASZ78_015637	A0A226MYZ6	A0A226MKD8	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Uncharacterized protein.	0.514
ASZ78_000781	ASZ78_000883	A0A226MZH1	A0A226N5V6	Uncharacterized protein.	Bromo domain-containing protein.	0.479
ASZ78_000781	ASZ78_003395	A0A226MZH1	A0A226MF45	Uncharacterized protein.	Uncharacterized protein.	0.441
ASZ78_000781	ASZ78_011666	A0A226MZH1	A0A226MFZ0	Uncharacterized protein.	Bromo domain-containing protein.	0.479