(104 nodes) Negative regulation of neuron death network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_002306	Uncharacterized protein. (562 aa)
	ASZ78_003923	Uncharacterized protein. (271 aa)
	ASZ78_007743	Uncharacterized protein. (227 aa)
	ASZ78_000228	Uncharacterized protein. (467 aa)
	ASZ78_000229	Uncharacterized protein. (145 aa)
	ASZ78_000847	Uncharacterized protein. (609 aa)
	ASZ78_011824	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (349 aa)
	ASZ78_010131	Uncharacterized protein. (237 aa)
	ASZ78_007531	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (244 aa)
	AARS	AA_TRNA_LIGASE_II_ALA domain-containing protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. (938 aa)
	ASZ78_010642	Uncharacterized protein. (189 aa)
	ASZ78_016539	RRM domain-containing protein. (814 aa)
	ASZ78_014679	Nicotinamide-nucleotide adenylyltransferase. (226 aa)
	ASZ78_007257	Receptor protein-tyrosine kinase. (717 aa)
	ASZ78_001766	Uncharacterized protein. (400 aa)
	ASZ78_010670	Uncharacterized protein. (256 aa)
	ASZ78_009141	Neur_chan_memb domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (270 aa)
	ASZ78_002529	IF rod domain-containing protein; Belongs to the intermediate filament family. (496 aa)
	ASZ78_014326	Uncharacterized protein. (419 aa)
	ASZ78_000734	Uncharacterized protein. (797 aa)
	ASZ78_006141	Fork-head domain-containing protein. (376 aa)
	ASZ78_014389	BZIP domain-containing protein. (347 aa)
	ASZ78_009725	TGF_BETA_2 domain-containing protein. (192 aa)
	ASZ78_007432	Uncharacterized protein. (2440 aa)
	ASZ78_000249	Beta-synuclein; Belongs to the synuclein family. (120 aa)
	ASZ78_006280	Uncharacterized protein. (644 aa)
	ASZ78_003190	Uncharacterized protein. (1215 aa)
	ASZ78_009454	Uncharacterized protein. (417 aa)
	ASZ78_015744	Uncharacterized protein. (424 aa)
	ASZ78_009553	Uncharacterized protein. (1060 aa)
	ASZ78_002216	Sulfhydryl oxidase. (191 aa)
	ASZ78_015318	Uncharacterized protein. (142 aa)
	ASZ78_015237	Uncharacterized protein. (427 aa)
	ASZ78_014709	Uncharacterized protein. (431 aa)
	ASZ78_005553	BHLH domain-containing protein. (220 aa)
	ASZ78_010346	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (796 aa)
	ASZ78_005525	J domain-containing protein. (198 aa)
	ASZ78_005488	BH4_2 domain-containing protein. (229 aa)
	ASZ78_005457	Ig-like domain-containing protein. (181 aa)
	ASZ78_015860	Uncharacterized protein. (463 aa)
	ASZ78_006003	BH4_2 domain-containing protein. (226 aa)
	ASZ78_010889	Uncharacterized protein; Belongs to the heparin-binding growth factors family. (190 aa)
	ASZ78_015795	Uncharacterized protein. (175 aa)
	ASZ78_015782	Uncharacterized protein. (264 aa)
	ASZ78_014233	LysM domain-containing protein. (629 aa)
	ASZ78_014232	TLDc domain-containing protein. (152 aa)
	ASZ78_004253	G_PROTEIN_RECEP_F1_2 domain-containing protein. (175 aa)
	ASZ78_002714	Uncharacterized protein. (655 aa)
	ASZ78_002743	Homeobox domain-containing protein. (255 aa)
	ASZ78_011503	Fe2OG dioxygenase domain-containing protein. (371 aa)
	ASZ78_016615	Uncharacterized protein. (179 aa)
	ASZ78_014873	Uncharacterized protein. (670 aa)
	ASZ78_010398	Protein kinase domain-containing protein. (109 aa)
	ASZ78_008174	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (996 aa)
	ASZ78_009971	Protein kinase domain-containing protein. (513 aa)
	ASZ78_003694	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (224 aa)
	ASZ78_004155	Uncharacterized protein. (856 aa)
	ASZ78_002898	Homeobox protein engrailed-like. (329 aa)
	ASZ78_000697	Uncharacterized protein. (849 aa)
	ASZ78_007223	PWWP domain-containing protein. (231 aa)
	ASZ78_007211	IF rod domain-containing protein; Belongs to the intermediate filament family. (1698 aa)
	ASZ78_000180	Uncharacterized protein. (598 aa)
	ASZ78_015536	Uncharacterized protein. (244 aa)
	ASZ78_015537	PH domain-containing protein. (231 aa)
	ASZ78_001892	Deacetylase sirtuin-type domain-containing protein. (593 aa)
	ASZ78_003866	Uncharacterized protein. (276 aa)
	ASZ78_013227	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family. (235 aa)
	ASZ78_012944	Protein kinase domain-containing protein. (457 aa)
	ASZ78_015102	PKD domain-containing protein. (407 aa)
	ASZ78_016165	Glucosylceramidase. (279 aa)
	ASZ78_007590	J domain-containing protein. (157 aa)
	ASZ78_006971	Protein-tyrosine-phosphatase. (2294 aa)
	ASZ78_004987	DJ-1_PfpI domain-containing protein. (189 aa)
	ASZ78_002537	POU domain protein. (386 aa)
	ASZ78_008240	RECA_2 domain-containing protein. (287 aa)
	ASZ78_016244	Uncharacterized protein. (636 aa)
	ASZ78_003362	Sema domain-containing protein; Belongs to the semaphorin family. (631 aa)
	ASZ78_003041	TF_AP-2 domain-containing protein. (393 aa)
	ASZ78_008138	Tyrosine-protein kinase receptor. (626 aa)
	ASZ78_011257	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (889 aa)
	ASZ78_011260	Uncharacterized protein. (68 aa)
	ASZ78_011242	Uncharacterized protein. (804 aa)
	ASZ78_004912	zf-RING_14 domain-containing protein. (198 aa)
	ASZ78_004110	Glucosylceramidase. (188 aa)
	ASZ78_011560	CTP_transf_like domain-containing protein. (132 aa)
	ASZ78_012432	Uncharacterized protein. (585 aa)
	ASZ78_005131	J domain-containing protein. (184 aa)
	ASZ78_004820	Protein kinase domain-containing protein. (76 aa)
	ASZ78_004819	Protein kinase domain-containing protein. (154 aa)
	ASZ78_016584	Uncharacterized protein. (445 aa)
	ASZ78_000293	Uncharacterized protein. (164 aa)
	ASZ78_001705	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1220 aa)
	ASZ78_017087	CCAAT/enhancer-binding protein. (279 aa)
	ASZ78_012645	Uncharacterized protein. (195 aa)
	ASZ78_012479	Uncharacterized protein. (568 aa)
	ASZ78_006360	F-box domain-containing protein. (488 aa)
	ASZ78_002473	Uncharacterized protein. (893 aa)
	ASZ78_002634	Uncharacterized protein. (356 aa)
	ASZ78_000092	Uncharacterized protein. (109 aa)
	ASZ78_009065	SCY domain-containing protein. (396 aa)
	ASZ78_009059	THAP-type domain-containing protein. (235 aa)
	ASZ78_007776	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1405 aa)
	ASZ78_012429	Homeobox protein engrailed-like. (323 aa)
	ASZ78_007742	WD_REPEATS_REGION domain-containing protein. (693 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000180	ASZ78_005488	A0A226MFC9	A0A226NJC6	Uncharacterized protein.	BH4_2 domain-containing protein.	0.572
ASZ78_000180	ASZ78_006003	A0A226MFC9	A0A226NIW8	Uncharacterized protein.	BH4_2 domain-containing protein.	0.854
ASZ78_000228	ASZ78_007531	A0A226MQY5	A0A226MPR8	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.477
ASZ78_000228	ASZ78_015744	A0A226MQY5	A0A226NPH1	Uncharacterized protein.	Uncharacterized protein.	0.908
ASZ78_000229	ASZ78_007531	A0A226MQR8	A0A226MPR8	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.477
ASZ78_000734	ASZ78_001766	A0A226MK82	A0A226MM87	Uncharacterized protein.	Uncharacterized protein.	0.415
ASZ78_000734	ASZ78_008174	A0A226MK82	A0A226NAP4	Uncharacterized protein.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.810
ASZ78_000734	ASZ78_010131	A0A226MK82	A0A226MQ26	Uncharacterized protein.	Uncharacterized protein.	0.907
ASZ78_000734	ASZ78_012645	A0A226MK82	A0A226MWP8	Uncharacterized protein.	Uncharacterized protein.	0.951
ASZ78_000734	ASZ78_015795	A0A226MK82	A0A226NI05	Uncharacterized protein.	Uncharacterized protein.	0.843
ASZ78_000847	ASZ78_005488	A0A226MQH2	A0A226NJC6	Uncharacterized protein.	BH4_2 domain-containing protein.	0.572
ASZ78_000847	ASZ78_006003	A0A226MQH2	A0A226NIW8	Uncharacterized protein.	BH4_2 domain-containing protein.	0.854
ASZ78_001705	ASZ78_002306	A0A226MHK7	A0A226MRP3	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.668
ASZ78_001705	ASZ78_002714	A0A226MHK7	A0A226NEJ1	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.865
ASZ78_001705	ASZ78_003362	A0A226MHK7	A0A226N6A4	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Sema domain-containing protein; Belongs to the semaphorin family.	0.561
ASZ78_001705	ASZ78_003866	A0A226MHK7	A0A226MDE9	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.536
ASZ78_001705	ASZ78_006003	A0A226MHK7	A0A226NIW8	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	BH4_2 domain-containing protein.	0.528
ASZ78_001705	ASZ78_007776	A0A226MHK7	A0A226MT22	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.588
ASZ78_001705	ASZ78_008138	A0A226MHK7	A0A226N5C1	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Tyrosine-protein kinase receptor.	0.513
ASZ78_001705	ASZ78_008174	A0A226MHK7	A0A226NAP4	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.939