(11 nodes) Regulation of oxidative stress-induced intrinsic apoptotic signaling pathway network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_002778	BZIP domain-containing protein. (582 aa)
	ASZ78_016256	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (194 aa)
	ASZ78_009971	Protein kinase domain-containing protein. (513 aa)
	ASZ78_004912	zf-RING_14 domain-containing protein. (198 aa)
	ASZ78_000950	Uncharacterized protein. (637 aa)
	ASZ78_010759	Uncharacterized protein. (615 aa)
	ASZ78_007531	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (244 aa)
	ASZ78_004730	NDK domain-containing protein; Belongs to the NDK family. (212 aa)
	ASZ78_007473	Uncharacterized protein. (450 aa)
	ASZ78_013850	Uncharacterized protein. (744 aa)
	ASZ78_001892	Deacetylase sirtuin-type domain-containing protein. (593 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000950	ASZ78_004912	A0A226MXJ0	A0A226N4R2	Uncharacterized protein.	zf-RING_14 domain-containing protein.	0.505
ASZ78_000950	ASZ78_007473	A0A226MXJ0	A0A226MLZ6	Uncharacterized protein.	Uncharacterized protein.	0.440
ASZ78_000950	ASZ78_009971	A0A226MXJ0	A0A226NA63	Uncharacterized protein.	Protein kinase domain-containing protein.	0.639
ASZ78_000950	ASZ78_016256	A0A226MXJ0	A0A226NBV0	Uncharacterized protein.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.589
ASZ78_001892	ASZ78_002778	A0A226MDM0	A0A226NEY4	Deacetylase sirtuin-type domain-containing protein.	BZIP domain-containing protein.	0.461
ASZ78_001892	ASZ78_007531	A0A226MDM0	A0A226MPR8	Deacetylase sirtuin-type domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.699
ASZ78_001892	ASZ78_009971	A0A226MDM0	A0A226NA63	Deacetylase sirtuin-type domain-containing protein.	Protein kinase domain-containing protein.	0.511
ASZ78_002778	ASZ78_001892	A0A226NEY4	A0A226MDM0	BZIP domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.461
ASZ78_004912	ASZ78_000950	A0A226N4R2	A0A226MXJ0	zf-RING_14 domain-containing protein.	Uncharacterized protein.	0.505
ASZ78_004912	ASZ78_007473	A0A226N4R2	A0A226MLZ6	zf-RING_14 domain-containing protein.	Uncharacterized protein.	0.503
ASZ78_004912	ASZ78_007531	A0A226N4R2	A0A226MPR8	zf-RING_14 domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.474
ASZ78_004912	ASZ78_009971	A0A226N4R2	A0A226NA63	zf-RING_14 domain-containing protein.	Protein kinase domain-containing protein.	0.999
ASZ78_007473	ASZ78_000950	A0A226MLZ6	A0A226MXJ0	Uncharacterized protein.	Uncharacterized protein.	0.440
ASZ78_007473	ASZ78_004912	A0A226MLZ6	A0A226N4R2	Uncharacterized protein.	zf-RING_14 domain-containing protein.	0.503
ASZ78_007473	ASZ78_009971	A0A226MLZ6	A0A226NA63	Uncharacterized protein.	Protein kinase domain-containing protein.	0.417
ASZ78_007531	ASZ78_001892	A0A226MPR8	A0A226MDM0	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Deacetylase sirtuin-type domain-containing protein.	0.699
ASZ78_007531	ASZ78_004912	A0A226MPR8	A0A226N4R2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	zf-RING_14 domain-containing protein.	0.474
ASZ78_007531	ASZ78_009971	A0A226MPR8	A0A226NA63	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Protein kinase domain-containing protein.	0.494
ASZ78_009971	ASZ78_000950	A0A226NA63	A0A226MXJ0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.639
ASZ78_009971	ASZ78_001892	A0A226NA63	A0A226MDM0	Protein kinase domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.511