(16 nodes) Regulation of autophagy of mitochondrion network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_004022	Uncharacterized protein. (317 aa)
	ASZ78_003393	Rhomboid domain-containing protein. (189 aa)
	ASZ78_013850	Uncharacterized protein. (744 aa)
	ASZ78_001637	Uncharacterized protein. (164 aa)
	ASZ78_007743	Uncharacterized protein. (227 aa)
	ASZ78_007742	WD_REPEATS_REGION domain-containing protein. (693 aa)
	ASZ78_012879	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (754 aa)
	ASZ78_010759	Uncharacterized protein. (615 aa)
	ASZ78_006360	F-box domain-containing protein. (488 aa)
	ASZ78_002009	Uncharacterized protein. (283 aa)
	ASZ78_002314	Uncharacterized protein. (103 aa)
	ASZ78_004912	zf-RING_14 domain-containing protein. (198 aa)
	ASZ78_009944	Uncharacterized protein. (345 aa)
	ASZ78_009941	Uncharacterized protein. (123 aa)
	ASZ78_009971	Protein kinase domain-containing protein. (513 aa)
	ASZ78_016615	Uncharacterized protein. (179 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001637	ASZ78_002009	A0A226MIW3	A0A226MXG6	Uncharacterized protein.	Uncharacterized protein.	0.860
ASZ78_001637	ASZ78_002314	A0A226MIW3	A0A226N3D3	Uncharacterized protein.	Uncharacterized protein.	0.929
ASZ78_002009	ASZ78_001637	A0A226MXG6	A0A226MIW3	Uncharacterized protein.	Uncharacterized protein.	0.860
ASZ78_002009	ASZ78_002314	A0A226MXG6	A0A226N3D3	Uncharacterized protein.	Uncharacterized protein.	0.921
ASZ78_002009	ASZ78_004912	A0A226MXG6	A0A226N4R2	Uncharacterized protein.	zf-RING_14 domain-containing protein.	0.905
ASZ78_002009	ASZ78_009971	A0A226MXG6	A0A226NA63	Uncharacterized protein.	Protein kinase domain-containing protein.	0.811
ASZ78_002009	ASZ78_012879	A0A226MXG6	A0A226MT54	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.619
ASZ78_002314	ASZ78_001637	A0A226N3D3	A0A226MIW3	Uncharacterized protein.	Uncharacterized protein.	0.929
ASZ78_002314	ASZ78_002009	A0A226N3D3	A0A226MXG6	Uncharacterized protein.	Uncharacterized protein.	0.921
ASZ78_003393	ASZ78_004912	A0A226MF70	A0A226N4R2	Rhomboid domain-containing protein.	zf-RING_14 domain-containing protein.	0.561
ASZ78_003393	ASZ78_009971	A0A226MF70	A0A226NA63	Rhomboid domain-containing protein.	Protein kinase domain-containing protein.	0.664
ASZ78_003393	ASZ78_012879	A0A226MF70	A0A226MT54	Rhomboid domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.404
ASZ78_004022	ASZ78_004912	A0A226MEA7	A0A226N4R2	Uncharacterized protein.	zf-RING_14 domain-containing protein.	0.530
ASZ78_004912	ASZ78_002009	A0A226N4R2	A0A226MXG6	zf-RING_14 domain-containing protein.	Uncharacterized protein.	0.905
ASZ78_004912	ASZ78_003393	A0A226N4R2	A0A226MF70	zf-RING_14 domain-containing protein.	Rhomboid domain-containing protein.	0.561
ASZ78_004912	ASZ78_004022	A0A226N4R2	A0A226MEA7	zf-RING_14 domain-containing protein.	Uncharacterized protein.	0.530
ASZ78_004912	ASZ78_006360	A0A226N4R2	A0A226MVU0	zf-RING_14 domain-containing protein.	F-box domain-containing protein.	0.593
ASZ78_004912	ASZ78_007742	A0A226N4R2	A0A226MRQ2	zf-RING_14 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.951
ASZ78_004912	ASZ78_007743	A0A226N4R2	A0A226MRA9	zf-RING_14 domain-containing protein.	Uncharacterized protein.	0.951
ASZ78_004912	ASZ78_009971	A0A226N4R2	A0A226NA63	zf-RING_14 domain-containing protein.	Protein kinase domain-containing protein.	0.999