33 items (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_005615	Uncharacterized protein. (183 aa)
	ASZ78_004849	HTH La-type RNA-binding domain-containing protein. (473 aa)
	ASZ78_013616	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (136 aa)
	ASZ78_017083	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (158 aa)
	ASZ78_006800	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	ASZ78_017052	Uncharacterized protein. (147 aa)
	ASZ78_017051	Uncharacterized protein. (161 aa)
	ASZ78_017053	Uncharacterized protein. (1239 aa)
	ASZ78_015443	Uncharacterized protein. (1557 aa)
	ASZ78_008694	TOG domain-containing protein. (2847 aa)
	ASZ78_008719	OBG-type G domain-containing protein. (422 aa)
	ASZ78_002090	LsmAD domain-containing protein. (1071 aa)
	ASZ78_001668	Uncharacterized protein. (103 aa)
	ASZ78_008961	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	ASZ78_006811	MPN domain-containing protein. (255 aa)
	ASZ78_014470	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	ASZ78_015328	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (301 aa)
	ASZ78_010409	TRASH domain-containing protein. (157 aa)
	ASZ78_004457	Ribosomal_L7Ae domain-containing protein. (132 aa)
	ASZ78_013693	Uncharacterized protein. (672 aa)
	ASZ78_007968	Uncharacterized protein. (125 aa)
	ASZ78_011057	Transcription factor BTF3; Belongs to the NAC-beta family. (138 aa)
	ASZ78_014323	Uncharacterized protein. (135 aa)
	ASZ78_003839	HTH La-type RNA-binding domain-containing protein. (432 aa)
	ASZ78_000572	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	ASZ78_008877	RWD domain-containing protein. (176 aa)
	ASZ78_004497	Uncharacterized protein. (605 aa)
	ASZ78_008107	Uncharacterized protein. (69 aa)
	ASZ78_008127	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (173 aa)
	ASZ78_008167	Transcription factor BTF3; Belongs to the NAC-beta family. (181 aa)
	ASZ78_010191	RWD domain-containing protein. (216 aa)
	ASZ78_009538	Ribosomal_L7Ae domain-containing protein. (266 aa)
	ASZ78_002272	Uncharacterized protein. (849 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000572	ASZ78_001668	A0A226MPH8	A0A226N970	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
ASZ78_000572	ASZ78_004457	A0A226MPH8	A0A226N1E8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal_L7Ae domain-containing protein.	0.999
ASZ78_000572	ASZ78_006800	A0A226MPH8	A0A226NJN8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
ASZ78_000572	ASZ78_006811	A0A226MPH8	A0A226N5P8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	MPN domain-containing protein.	0.966
ASZ78_000572	ASZ78_007968	A0A226MPH8	A0A226MFI4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
ASZ78_000572	ASZ78_008107	A0A226MPH8	A0A226MXI9	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
ASZ78_000572	ASZ78_008127	A0A226MPH8	A0A226MXL0	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.989
ASZ78_000572	ASZ78_008167	A0A226MPH8	A0A226MY43	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Transcription factor BTF3; Belongs to the NAC-beta family.	0.689
ASZ78_000572	ASZ78_008694	A0A226MPH8	A0A226NAV5	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	TOG domain-containing protein.	0.926
ASZ78_000572	ASZ78_008719	A0A226MPH8	A0A226NAL4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	OBG-type G domain-containing protein.	0.695
ASZ78_000572	ASZ78_008961	A0A226MPH8	A0A226N7R0	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
ASZ78_000572	ASZ78_009538	A0A226MPH8	A0A226NNU7	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal_L7Ae domain-containing protein.	0.999
ASZ78_000572	ASZ78_010409	A0A226MPH8	A0A226N221	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	TRASH domain-containing protein.	0.999
ASZ78_000572	ASZ78_011057	A0A226MPH8	A0A226MI88	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Transcription factor BTF3; Belongs to the NAC-beta family.	0.689
ASZ78_000572	ASZ78_013616	A0A226MPH8	A0A226MDE3	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
ASZ78_000572	ASZ78_014323	A0A226MPH8	A0A226MKW2	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
ASZ78_000572	ASZ78_014470	A0A226MPH8	A0A226N4F0	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
ASZ78_000572	ASZ78_015328	A0A226MPH8	A0A226N3G4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
ASZ78_000572	ASZ78_017083	A0A226MPH8	A0A226M8W2	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.989
ASZ78_001668	ASZ78_000572	A0A226N970	A0A226MPH8	Uncharacterized protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999