(26 nodes) Ras guanine nucleotide exchange factor domain superfamily network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_009545	Uncharacterized protein. (794 aa)
	ASZ78_009626	Uncharacterized protein. (944 aa)
	ASZ78_009566	Ras-GEF domain-containing protein. (1063 aa)
	ASZ78_015285	Uncharacterized protein. (1320 aa)
	ASZ78_003297	Uncharacterized protein. (485 aa)
	ASZ78_010940	Uncharacterized protein. (1776 aa)
	ASZ78_006645	Uncharacterized protein. (557 aa)
	ASZ78_003225	Uncharacterized protein. (1673 aa)
	ASZ78_002751	Uncharacterized protein. (447 aa)
	ASZ78_015459	Uncharacterized protein. (682 aa)
	ASZ78_005061	Uncharacterized protein. (685 aa)
	ASZ78_001673	Uncharacterized protein. (1239 aa)
	ASZ78_008983	Ras-GEF domain-containing protein. (958 aa)
	ASZ78_014463	Uncharacterized protein. (53 aa)
	ASZ78_008033	Uncharacterized protein. (1256 aa)
	ASZ78_014464	Uncharacterized protein. (695 aa)
	ASZ78_003919	Uncharacterized protein. (823 aa)
	ASZ78_000523	Uncharacterized protein. (1584 aa)
	ASZ78_008300	Uncharacterized protein. (461 aa)
	ASZ78_008791	Ras-GEF domain-containing protein. (238 aa)
	ASZ78_008790	Uncharacterized protein. (752 aa)
	ASZ78_007111	Uncharacterized protein. (710 aa)
	ASZ78_016597	Uncharacterized protein. (498 aa)
	ASZ78_001487	Ras-GEF domain-containing protein. (203 aa)
	ASZ78_001486	Uncharacterized protein. (161 aa)
	ASZ78_013389	Phosphoinositide phospholipase C. (1696 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000523	ASZ78_001486	A0A226MPR7	A0A226MHJ2	Uncharacterized protein.	Uncharacterized protein.	0.603
ASZ78_000523	ASZ78_001487	A0A226MPR7	A0A226MHJ3	Uncharacterized protein.	Ras-GEF domain-containing protein.	0.600
ASZ78_000523	ASZ78_001673	A0A226MPR7	A0A226N8W5	Uncharacterized protein.	Uncharacterized protein.	0.600
ASZ78_000523	ASZ78_003225	A0A226MPR7	A0A226NEW1	Uncharacterized protein.	Uncharacterized protein.	0.804
ASZ78_000523	ASZ78_003297	A0A226MPR7	A0A226NK26	Uncharacterized protein.	Uncharacterized protein.	0.544
ASZ78_000523	ASZ78_005061	A0A226MPR7	A0A226NCX1	Uncharacterized protein.	Uncharacterized protein.	0.599
ASZ78_000523	ASZ78_006645	A0A226MPR7	A0A226NF34	Uncharacterized protein.	Uncharacterized protein.	0.544
ASZ78_000523	ASZ78_008033	A0A226MPR7	A0A226N5D4	Uncharacterized protein.	Uncharacterized protein.	0.600
ASZ78_000523	ASZ78_009566	A0A226MPR7	A0A226NP31	Uncharacterized protein.	Ras-GEF domain-containing protein.	0.617
ASZ78_000523	ASZ78_014463	A0A226MPR7	A0A226N5E9	Uncharacterized protein.	Uncharacterized protein.	0.600
ASZ78_000523	ASZ78_014464	A0A226MPR7	A0A226N584	Uncharacterized protein.	Uncharacterized protein.	0.600
ASZ78_000523	ASZ78_015285	A0A226MPR7	A0A226NKW4	Uncharacterized protein.	Uncharacterized protein.	0.600
ASZ78_000523	ASZ78_015459	A0A226MPR7	A0A226NDV3	Uncharacterized protein.	Uncharacterized protein.	0.599
ASZ78_001486	ASZ78_000523	A0A226MHJ2	A0A226MPR7	Uncharacterized protein.	Uncharacterized protein.	0.603
ASZ78_001486	ASZ78_001487	A0A226MHJ2	A0A226MHJ3	Uncharacterized protein.	Ras-GEF domain-containing protein.	0.917
ASZ78_001486	ASZ78_003225	A0A226MHJ2	A0A226NEW1	Uncharacterized protein.	Uncharacterized protein.	0.604
ASZ78_001486	ASZ78_003297	A0A226MHJ2	A0A226NK26	Uncharacterized protein.	Uncharacterized protein.	0.504
ASZ78_001486	ASZ78_005061	A0A226MHJ2	A0A226NCX1	Uncharacterized protein.	Uncharacterized protein.	0.513
ASZ78_001486	ASZ78_006645	A0A226MHJ2	A0A226NF34	Uncharacterized protein.	Uncharacterized protein.	0.504
ASZ78_001486	ASZ78_015459	A0A226MHJ2	A0A226NDV3	Uncharacterized protein.	Uncharacterized protein.	0.513