(32 nodes) Formation of the Early Elongation Complex network (Callipepla squamata)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_004293	TFIIF_beta domain-containing protein. (64 aa)
	ASZ78_002458	Uncharacterized protein. (496 aa)
	ASZ78_007544	RPOL4c domain-containing protein. (142 aa)
	ASZ78_002474	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	ASZ78_014903	HDAg domain-containing protein. (539 aa)
	ASZ78_014421	Uncharacterized protein. (127 aa)
	ASZ78_014947	General transcription factor IIH subunit. (383 aa)
	ASZ78_006282	Uncharacterized protein. (215 aa)
	ASZ78_010532	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	ASZ78_013469	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (793 aa)
	ASZ78_015664	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (352 aa)
	ASZ78_014755	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (183 aa)
	ASZ78_002023	Uncharacterized protein. (152 aa)
	ASZ78_002025	Uncharacterized protein. (151 aa)
	ASZ78_016267	RNA_pol_L_2 domain-containing protein. (117 aa)
	ASZ78_012466	MIF4G domain-containing protein. (754 aa)
	ASZ78_011594	Uncharacterized protein. (545 aa)
	ASZ78_015909	RRM domain-containing protein. (264 aa)
	ASZ78_007973	Uncharacterized protein. (345 aa)
	ASZ78_004125	SHS2_Rpb7-N domain-containing protein. (71 aa)
	ASZ78_016135	TFIIS-type domain-containing protein. (37 aa)
	ASZ78_004843	RNA_pol_Rpb1_1 domain-containing protein. (70 aa)
	ASZ78_007881	Transcription elongation factor SPT5. (1076 aa)
	ASZ78_006190	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
	ASZ78_003169	Uncharacterized protein. (67 aa)
	ASZ78_013374	Spt4 domain-containing protein. (85 aa)
	ASZ78_015507	RING-type domain-containing protein. (455 aa)
	ASZ78_004933	Helicase ATP-binding domain-containing protein. (685 aa)
	ASZ78_014857	Uncharacterized protein. (71 aa)
	ASZ78_002307	CYCLIN domain-containing protein; Belongs to the cyclin family. (281 aa)
	ASZ78_010581	Uncharacterized protein. (555 aa)
	ASZ78_009081	RPOLD domain-containing protein. (252 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_002023	ASZ78_002025	A0A226N911	A0A226N929	Uncharacterized protein.	Uncharacterized protein.	0.945
ASZ78_002023	ASZ78_002307	A0A226N911	A0A226MR95	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.986
ASZ78_002023	ASZ78_002458	A0A226N911	A0A226MTV7	Uncharacterized protein.	Uncharacterized protein.	0.997
ASZ78_002023	ASZ78_002474	A0A226N911	A0A226MV33	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.928
ASZ78_002023	ASZ78_003169	A0A226N911	A0A226MGG0	Uncharacterized protein.	Uncharacterized protein.	0.927
ASZ78_002023	ASZ78_004125	A0A226N911	A0A226MAY5	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.934
ASZ78_002023	ASZ78_004293	A0A226N911	A0A226MRQ9	Uncharacterized protein.	TFIIF_beta domain-containing protein.	0.947
ASZ78_002023	ASZ78_004843	A0A226N911	A0A226MBN4	Uncharacterized protein.	RNA_pol_Rpb1_1 domain-containing protein.	0.906
ASZ78_002023	ASZ78_004933	A0A226N911	A0A226MJ88	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.996
ASZ78_002023	ASZ78_006282	A0A226N911	A0A226N1Z0	Uncharacterized protein.	Uncharacterized protein.	0.931
ASZ78_002023	ASZ78_007544	A0A226N911	A0A226MU48	Uncharacterized protein.	RPOL4c domain-containing protein.	0.933
ASZ78_002023	ASZ78_007881	A0A226N911	A0A226MDM4	Uncharacterized protein.	Transcription elongation factor SPT5.	0.652
ASZ78_002023	ASZ78_007973	A0A226N911	A0A226MA91	Uncharacterized protein.	Uncharacterized protein.	0.902
ASZ78_002023	ASZ78_009081	A0A226N911	A0A226MT83	Uncharacterized protein.	RPOLD domain-containing protein.	0.930
ASZ78_002023	ASZ78_010532	A0A226N911	A0A226N3M7	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.930
ASZ78_002023	ASZ78_012466	A0A226N911	A0A226NEY1	Uncharacterized protein.	MIF4G domain-containing protein.	0.614
ASZ78_002023	ASZ78_014421	A0A226N911	A0A226N0U7	Uncharacterized protein.	Uncharacterized protein.	0.936
ASZ78_002023	ASZ78_014857	A0A226N911	A0A226MR35	Uncharacterized protein.	Uncharacterized protein.	0.971
ASZ78_002023	ASZ78_014947	A0A226N911	A0A226N137	Uncharacterized protein.	General transcription factor IIH subunit.	0.997
ASZ78_002023	ASZ78_015507	A0A226N911	A0A226MIF0	Uncharacterized protein.	RING-type domain-containing protein.	0.985