(28 nodes) Synthesis of PC network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_005988	START domain-containing protein. (215 aa)
	ASZ78_015730	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (388 aa)
	ASZ78_002170	Uncharacterized protein. (126 aa)
	ASZ78_003316	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (611 aa)
	ASZ78_005495	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (358 aa)
	ASZ78_015880	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (229 aa)
	ASZ78_015882	Uncharacterized protein. (193 aa)
	ASZ78_012988	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (508 aa)
	ASZ78_007363	START domain-containing protein. (340 aa)
	ASZ78_016798	LNS2 domain-containing protein. (1008 aa)
	ASZ78_006489	START domain-containing protein. (323 aa)
	ASZ78_001023	CTP_transf_like domain-containing protein. (367 aa)
	ASZ78_012332	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (433 aa)
	ASZ78_015575	LNS2 domain-containing protein. (918 aa)
	ASZ78_001148	Uncharacterized protein. (242 aa)
	ASZ78_012612	Uncharacterized protein. (452 aa)
	ASZ78_000530	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (816 aa)
	ASZ78_009095	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (350 aa)
	ASZ78_007782	Hydrolase_4 domain-containing protein. (375 aa)
	ASZ78_009114	AB hydrolase-1 domain-containing protein. (436 aa)
	ASZ78_000930	CTP_transf_like domain-containing protein. (367 aa)
	ASZ78_010676	Uncharacterized protein. (435 aa)
	ASZ78_005117	AB hydrolase-1 domain-containing protein. (404 aa)
	ASZ78_005926	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (231 aa)
	ASZ78_005925	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (392 aa)
	ASZ78_015936	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (205 aa)
	ASZ78_007408	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (231 aa)
	ASZ78_000064	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (218 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000064	ASZ78_000530	A0A226MBB4	A0A226MTW9	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.664
ASZ78_000064	ASZ78_005925	A0A226MBB4	A0A226MH64	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.900
ASZ78_000064	ASZ78_012988	A0A226MBB4	A0A226NG01	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.677
ASZ78_000530	ASZ78_000064	A0A226MTW9	A0A226MBB4	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.664
ASZ78_000530	ASZ78_005925	A0A226MTW9	A0A226MH64	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.651
ASZ78_000530	ASZ78_005926	A0A226MTW9	A0A226MHP2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.651
ASZ78_000530	ASZ78_012988	A0A226MTW9	A0A226NG01	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.808
ASZ78_000530	ASZ78_015936	A0A226MTW9	A0A226MBR2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.651
ASZ78_000930	ASZ78_001023	A0A226MPD9	A0A226N5S8	CTP_transf_like domain-containing protein.	CTP_transf_like domain-containing protein.	0.961
ASZ78_000930	ASZ78_001148	A0A226MPD9	A0A226MZ48	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.842
ASZ78_000930	ASZ78_002170	A0A226MPD9	A0A226NM24	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.558
ASZ78_000930	ASZ78_012612	A0A226MPD9	A0A226MWP5	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.951
ASZ78_000930	ASZ78_015730	A0A226MPD9	A0A226NPT4	CTP_transf_like domain-containing protein.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.984
ASZ78_000930	ASZ78_015880	A0A226MPD9	A0A226NJ33	CTP_transf_like domain-containing protein.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.927
ASZ78_000930	ASZ78_015882	A0A226MPD9	A0A226NI65	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.927
ASZ78_001023	ASZ78_000930	A0A226N5S8	A0A226MPD9	CTP_transf_like domain-containing protein.	CTP_transf_like domain-containing protein.	0.961
ASZ78_001023	ASZ78_001148	A0A226N5S8	A0A226MZ48	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.836
ASZ78_001023	ASZ78_002170	A0A226N5S8	A0A226NM24	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.558
ASZ78_001023	ASZ78_012612	A0A226N5S8	A0A226MWP5	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.943
ASZ78_001023	ASZ78_015730	A0A226N5S8	A0A226NPT4	CTP_transf_like domain-containing protein.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.944