(43 nodes) Xenobiotics network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_007600	Uncharacterized protein; Belongs to the cytochrome P450 family. (67 aa)
	ASZ78_014955	Uncharacterized protein. (169 aa)
	ASZ78_011236	Uncharacterized protein. (114 aa)
	ASZ78_016344	Uncharacterized protein. (203 aa)
	ASZ78_001199	Uncharacterized protein; Belongs to the cytochrome P450 family. (255 aa)
	ASZ78_009888	Uncharacterized protein; Belongs to the cytochrome P450 family. (228 aa)
	ASZ78_007770	Uncharacterized protein; Belongs to the cytochrome P450 family. (193 aa)
	ASZ78_006239	Uncharacterized protein. (395 aa)
	ASZ78_001702	Uncharacterized protein. (194 aa)
	ASZ78_007469	Uncharacterized protein; Belongs to the cytochrome P450 family. (491 aa)
	ASZ78_004340	Uncharacterized protein; Belongs to the cytochrome P450 family. (494 aa)
	ASZ78_012358	Uncharacterized protein; Belongs to the cytochrome P450 family. (395 aa)
	ASZ78_010510	Uncharacterized protein; Belongs to the cytochrome P450 family. (468 aa)
	ASZ78_003592	Uncharacterized protein. (114 aa)
	ASZ78_003591	Uncharacterized protein; Belongs to the cytochrome P450 family. (344 aa)
	ASZ78_010199	Uncharacterized protein. (143 aa)
	ASZ78_013046	Uncharacterized protein; Belongs to the cytochrome P450 family. (494 aa)
	ASZ78_013047	Uncharacterized protein. (109 aa)
	ASZ78_012035	Uncharacterized protein; Belongs to the cytochrome P450 family. (496 aa)
	ASZ78_012033	Uncharacterized protein; Belongs to the cytochrome P450 family. (642 aa)
	ASZ78_003709	Uncharacterized protein. (1595 aa)
	ASZ78_003710	Uncharacterized protein; Belongs to the cytochrome P450 family. (204 aa)
	ASZ78_016456	Uncharacterized protein; Belongs to the cytochrome P450 family. (565 aa)
	ASZ78_016461	Uncharacterized protein; Belongs to the cytochrome P450 family. (530 aa)
	ASZ78_007157	Uncharacterized protein. (637 aa)
	ASZ78_000590	Uncharacterized protein; Belongs to the cytochrome P450 family. (526 aa)
	ASZ78_000589	Uncharacterized protein; Belongs to the cytochrome P450 family. (505 aa)
	ASZ78_000837	Uncharacterized protein. (648 aa)
	ASZ78_001880	Uncharacterized protein; Belongs to the cytochrome P450 family. (329 aa)
	ASZ78_004398	PAS domain-containing protein. (492 aa)
	ASZ78_011978	Uncharacterized protein; Belongs to the cytochrome P450 family. (492 aa)
	ASZ78_011979	Uncharacterized protein; Belongs to the cytochrome P450 family. (456 aa)
	ASZ78_010233	BHLH domain-containing protein. (874 aa)
	ASZ78_010234	Uncharacterized protein. (642 aa)
	ASZ78_010511	Uncharacterized protein; Belongs to the cytochrome P450 family. (393 aa)
	ASZ78_010509	Uncharacterized protein. (863 aa)
	ASZ78_010505	Uncharacterized protein; Belongs to the cytochrome P450 family. (403 aa)
	ASZ78_008893	Uncharacterized protein. (859 aa)
	ASZ78_003046	Uncharacterized protein. (873 aa)
	ASZ78_004713	Uncharacterized protein. (928 aa)
	ASZ78_004711	Uncharacterized protein; Belongs to the cytochrome P450 family. (504 aa)
	ASZ78_004675	Uncharacterized protein; Belongs to the cytochrome P450 family. (563 aa)
	ASZ78_004676	Uncharacterized protein. (501 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000589	ASZ78_004675	A0A226MPE6	A0A226NJL0	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.672
ASZ78_000589	ASZ78_004676	A0A226MPE6	A0A226NJQ1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.671
ASZ78_000589	ASZ78_012035	A0A226MPE6	A0A226MDT1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.521
ASZ78_000589	ASZ78_016456	A0A226MPE6	A0A226MJL5	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.477
ASZ78_000589	ASZ78_016461	A0A226MPE6	A0A226MK23	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.472
ASZ78_000590	ASZ78_004675	A0A226MP39	A0A226NJL0	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.673
ASZ78_000590	ASZ78_004676	A0A226MP39	A0A226NJQ1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.670
ASZ78_000590	ASZ78_012035	A0A226MP39	A0A226MDT1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.521
ASZ78_000590	ASZ78_016456	A0A226MP39	A0A226MJL5	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.484
ASZ78_000590	ASZ78_016461	A0A226MP39	A0A226MK23	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.478
ASZ78_000837	ASZ78_004398	A0A226MQF9	A0A226MYR0	Uncharacterized protein.	PAS domain-containing protein.	0.831
ASZ78_000837	ASZ78_007157	A0A226MQF9	A0A226MLC0	Uncharacterized protein.	Uncharacterized protein.	0.831
ASZ78_000837	ASZ78_016456	A0A226MQF9	A0A226MJL5	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.438
ASZ78_000837	ASZ78_016461	A0A226MQF9	A0A226MK23	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.577
ASZ78_001199	ASZ78_004675	A0A226M8Q0	A0A226NJL0	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.650
ASZ78_001199	ASZ78_004676	A0A226M8Q0	A0A226NJQ1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.651
ASZ78_001199	ASZ78_012035	A0A226M8Q0	A0A226MDT1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.520
ASZ78_001199	ASZ78_016456	A0A226M8Q0	A0A226MJL5	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.469
ASZ78_001199	ASZ78_016461	A0A226M8Q0	A0A226MK23	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.465
ASZ78_001702	ASZ78_004675	A0A226MA85	A0A226NJL0	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.590