13 items (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_004400	Uncharacterized protein. (851 aa)
	ASZ78_013296	Homeobox domain-containing protein. (292 aa)
	ASZ78_000377	Uncharacterized protein. (704 aa)
	ASZ78_001012	Peptidase_M13_N domain-containing protein. (165 aa)
	ASZ78_009816	Uncharacterized protein. (730 aa)
	ASZ78_004209	Guanylate cyclase. (858 aa)
	ASZ78_001011	Uncharacterized protein. (192 aa)
	ASZ78_004212	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (317 aa)
	ASZ78_012217	Guanylate cyclase. (937 aa)
	ASZ78_006064	Peptidase_M13_N domain-containing protein. (432 aa)
	ASZ78_009935	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (532 aa)
	ASZ78_009933	Uncharacterized protein. (139 aa)
	ASZ78_013304	Guanylate cyclase. (906 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001011	ASZ78_001012	A0A226N6K5	A0A226N6E3	Uncharacterized protein.	Peptidase_M13_N domain-containing protein.	0.846
ASZ78_001011	ASZ78_006064	A0A226N6K5	A0A226N7I8	Uncharacterized protein.	Peptidase_M13_N domain-containing protein.	0.950
ASZ78_001012	ASZ78_001011	A0A226N6E3	A0A226N6K5	Peptidase_M13_N domain-containing protein.	Uncharacterized protein.	0.846
ASZ78_004209	ASZ78_009933	A0A226MF58	A0A226NAS2	Guanylate cyclase.	Uncharacterized protein.	0.958
ASZ78_004209	ASZ78_009935	A0A226MF58	A0A226NA29	Guanylate cyclase.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.587
ASZ78_004212	ASZ78_009933	A0A226MEX5	A0A226NAS2	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Uncharacterized protein.	0.822
ASZ78_004400	ASZ78_009933	A0A226MTF3	A0A226NAS2	Uncharacterized protein.	Uncharacterized protein.	0.727
ASZ78_006064	ASZ78_001011	A0A226N7I8	A0A226N6K5	Peptidase_M13_N domain-containing protein.	Uncharacterized protein.	0.950
ASZ78_009933	ASZ78_004209	A0A226NAS2	A0A226MF58	Uncharacterized protein.	Guanylate cyclase.	0.958
ASZ78_009933	ASZ78_004212	A0A226NAS2	A0A226MEX5	Uncharacterized protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.822
ASZ78_009933	ASZ78_004400	A0A226NAS2	A0A226MTF3	Uncharacterized protein.	Uncharacterized protein.	0.727
ASZ78_009933	ASZ78_009935	A0A226NAS2	A0A226NA29	Uncharacterized protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.822
ASZ78_009933	ASZ78_012217	A0A226NAS2	A0A226ME57	Uncharacterized protein.	Guanylate cyclase.	0.822
ASZ78_009933	ASZ78_013296	A0A226NAS2	A0A226MRR8	Uncharacterized protein.	Homeobox domain-containing protein.	0.447
ASZ78_009933	ASZ78_013304	A0A226NAS2	A0A226MVF0	Uncharacterized protein.	Guanylate cyclase.	0.822
ASZ78_009935	ASZ78_004209	A0A226NA29	A0A226MF58	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Guanylate cyclase.	0.587
ASZ78_009935	ASZ78_009933	A0A226NA29	A0A226NAS2	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Uncharacterized protein.	0.822
ASZ78_012217	ASZ78_009933	A0A226ME57	A0A226NAS2	Guanylate cyclase.	Uncharacterized protein.	0.822
ASZ78_013296	ASZ78_009933	A0A226MRR8	A0A226NAS2	Homeobox domain-containing protein.	Uncharacterized protein.	0.447
ASZ78_013304	ASZ78_009933	A0A226MVF0	A0A226NAS2	Guanylate cyclase.	Uncharacterized protein.	0.822