(137 nodes) CDC42 GTPase cycle network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_016188	Uncharacterized protein. (75 aa)
	ASZ78_004955	Uncharacterized protein. (1325 aa)
	ASZ78_005283	WD_REPEATS_REGION domain-containing protein. (607 aa)
	ASZ78_005278	Uncharacterized protein. (200 aa)
	ASZ78_005284	Uncharacterized protein. (116 aa)
	ASZ78_007365	Uncharacterized protein. (1485 aa)
	ASZ78_008736	Uncharacterized protein. (600 aa)
	ASZ78_006560	Uncharacterized protein. (170 aa)
	ASZ78_008738	Rho-GAP domain-containing protein. (301 aa)
	ASZ78_008181	Uncharacterized protein. (884 aa)
	ASZ78_006823	Uncharacterized protein. (93 aa)
	ASZ78_006826	CRAL-TRIO domain-containing protein. (409 aa)
	ASZ78_006824	Uncharacterized protein. (704 aa)
	ASZ78_008991	WH2 domain-containing protein. (105 aa)
	ASZ78_015659	Uncharacterized protein. (759 aa)
	ASZ78_000380	Uncharacterized protein. (720 aa)
	ASZ78_005434	Rho-GAP domain-containing protein. (663 aa)
	ASZ78_006479	Uncharacterized protein. (801 aa)
	ASZ78_014463	Uncharacterized protein. (53 aa)
	ASZ78_014464	Uncharacterized protein. (695 aa)
	ASZ78_006480	Uncharacterized protein. (1054 aa)
	ASZ78_006470	Uncharacterized protein. (1228 aa)
	ASZ78_006287	Uncharacterized protein. (1066 aa)
	ASZ78_001007	Uncharacterized protein. (1058 aa)
	ASZ78_011995	Uncharacterized protein. (634 aa)
	ASZ78_011997	PH domain-containing protein. (79 aa)
	ASZ78_013675	Uncharacterized protein. (204 aa)
	ASZ78_016547	Uncharacterized protein. (94 aa)
	ASZ78_015020	Uncharacterized protein. (1739 aa)
	ASZ78_016546	Uncharacterized protein. (211 aa)
	ASZ78_001889	Uncharacterized protein. (1019 aa)
	ASZ78_001888	Uncharacterized protein. (354 aa)
	ASZ78_016542	CRAL-TRIO domain-containing protein. (551 aa)
	ASZ78_016545	DH domain-containing protein. (208 aa)
	ASZ78_016543	Uncharacterized protein. (158 aa)
	ASZ78_006094	Uncharacterized protein. (166 aa)
	ASZ78_001822	Uncharacterized protein. (1569 aa)
	ASZ78_001185	Uncharacterized protein. (980 aa)
	ASZ78_007231	Uncharacterized protein. (565 aa)
	ASZ78_008423	Rho-GAP domain-containing protein. (587 aa)
	ASZ78_012107	WH2 domain-containing protein. (479 aa)
	ASZ78_004485	Uncharacterized protein. (867 aa)
	ASZ78_009660	WH2 domain-containing protein. (161 aa)
	ASZ78_004486	Bcr-Abl_Oligo domain-containing protein. (205 aa)
	ASZ78_006263	Uncharacterized protein. (1095 aa)
	ASZ78_000325	Uncharacterized protein. (574 aa)
	ASZ78_010621	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2010 aa)
	ASZ78_003257	Uncharacterized protein. (203 aa)
	ASZ78_012882	Uncharacterized protein. (351 aa)
	ASZ78_012881	Uncharacterized protein. (368 aa)
	ASZ78_012525	Uncharacterized protein. (1913 aa)
	ASZ78_003256	DH domain-containing protein. (728 aa)
	ASZ78_009855	Rho-GAP domain-containing protein. (1652 aa)
	ASZ78_013963	Uncharacterized protein. (970 aa)
	ASZ78_009362	Uncharacterized protein. (1234 aa)
	ASZ78_003922	Uncharacterized protein. (1192 aa)
	ASZ78_009481	Uncharacterized protein. (136 aa)
	ASZ78_014850	Rho-GAP domain-containing protein. (685 aa)
	ASZ78_007748	Uncharacterized protein. (453 aa)
	ASZ78_010177	Uncharacterized protein. (1041 aa)
	ASZ78_016414	Uncharacterized protein. (335 aa)
	ASZ78_016415	Uncharacterized protein. (740 aa)
	ASZ78_001422	Uncharacterized protein; Belongs to the DOCK family. (2041 aa)
	ASZ78_015950	Rho-GAP domain-containing protein. (485 aa)
	ASZ78_006996	Uncharacterized protein. (196 aa)
	ASZ78_006995	Rho-GAP domain-containing protein. (743 aa)
	ASZ78_017030	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (229 aa)
	ASZ78_008506	Uncharacterized protein. (126 aa)
	ASZ78_004729	Rho-GAP domain-containing protein. (903 aa)
	ASZ78_008793	Uncharacterized protein. (607 aa)
	ASZ78_009823	Uncharacterized protein. (591 aa)
	ASZ78_016187	Uncharacterized protein. (1249 aa)
	ASZ78_001784	Uncharacterized protein. (731 aa)
	ASZ78_011134	Uncharacterized protein. (1133 aa)
	ASZ78_012121	PDZ domain-containing protein. (687 aa)
	ASZ78_012124	Uncharacterized protein. (155 aa)
	ASZ78_012122	Uncharacterized protein. (712 aa)
	ASZ78_001341	Uncharacterized protein. (723 aa)
	ASZ78_000691	Uncharacterized protein. (1813 aa)
	ASZ78_013260	Rho-GAP domain-containing protein. (460 aa)
	ASZ78_013261	Uncharacterized protein. (121 aa)
	ASZ78_014779	Uncharacterized protein. (697 aa)
	ASZ78_008191	Uncharacterized protein; Belongs to the DOCK family. (1780 aa)
	ASZ78_011175	PH domain-containing protein. (683 aa)
	ASZ78_012539	Uncharacterized protein. (777 aa)
	ASZ78_006725	Uncharacterized protein. (228 aa)
	ASZ78_003283	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	ASZ78_014778	Uncharacterized protein. (814 aa)
	ASZ78_015186	Uncharacterized protein. (1691 aa)
	ASZ78_012761	Uncharacterized protein. (169 aa)
	ASZ78_012757	Uncharacterized protein. (1494 aa)
	ASZ78_003589	Uncharacterized protein. (766 aa)
	ASZ78_010476	Uncharacterized protein. (492 aa)
	ASZ78_000232	Rho-GAP domain-containing protein. (820 aa)
	ASZ78_000338	BTB domain-containing protein. (587 aa)
	ASZ78_006982	Rho-GAP domain-containing protein. (86 aa)
	ASZ78_004311	Rho-GAP domain-containing protein. (168 aa)
	ASZ78_000333	Uncharacterized protein. (140 aa)
	ASZ78_003033	Uncharacterized protein. (149 aa)
	ASZ78_004959	SH3 domain-containing protein. (270 aa)
	ASZ78_002515	BTB_2 domain-containing protein. (762 aa)
	ASZ78_004957	Uncharacterized protein. (379 aa)
	ASZ78_001617	Uncharacterized protein. (533 aa)
	ASZ78_016974	Uncharacterized protein. (807 aa)
	ASZ78_015455	FH2 domain-containing protein. (50 aa)
	ASZ78_002762	Uncharacterized protein. (334 aa)
	ASZ78_004426	Uncharacterized protein. (1507 aa)
	ASZ78_006629	Uncharacterized protein. (705 aa)
	ASZ78_006628	PH domain-containing protein. (176 aa)
	ASZ78_001540	Uncharacterized protein. (1291 aa)
	ASZ78_001541	Rho-GAP domain-containing protein. (144 aa)
	ASZ78_007511	Rho-GAP domain-containing protein. (657 aa)
	ASZ78_013903	DUF3398 domain-containing protein. (590 aa)
	ASZ78_013907	Uncharacterized protein; Belongs to the DOCK family. (1450 aa)
	ASZ78_015137	FH2 domain-containing protein. (142 aa)
	ASZ78_015802	Uncharacterized protein. (1122 aa)
	ASZ78_010933	Uncharacterized protein. (986 aa)
	ASZ78_006018	Uncharacterized protein; Belongs to the DOCK family. (1514 aa)
	ASZ78_010935	Uncharacterized protein. (668 aa)
	ASZ78_006803	Uncharacterized protein. (1066 aa)
	ASZ78_016772	Uncharacterized protein. (483 aa)
	ASZ78_005460	Uncharacterized protein. (1067 aa)
	ASZ78_005619	Uncharacterized protein. (219 aa)
	ASZ78_014139	Uncharacterized protein. (117 aa)
	ASZ78_014141	FERM domain-containing protein. (800 aa)
	ASZ78_005618	Uncharacterized protein. (750 aa)
	ASZ78_014140	Uncharacterized protein. (589 aa)
	ASZ78_000400	PH domain-containing protein. (647 aa)
	ASZ78_014144	Uncharacterized protein; Belongs to the DOCK family. (2050 aa)
	ASZ78_015321	Rib_recp_KP_reg domain-containing protein. (997 aa)
	ASZ78_016659	Uncharacterized protein. (394 aa)
	ASZ78_015267	Tudor domain-containing protein. (608 aa)
	ASZ78_011356	Uncharacterized protein. (510 aa)
	ASZ78_002242	Uncharacterized protein. (885 aa)
	ASZ78_014286	Uncharacterized protein. (1681 aa)
	ASZ78_005329	Rho-GAP domain-containing protein. (1464 aa)
	ASZ78_009527	Uncharacterized protein. (746 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000232	ASZ78_006094	A0A226MCI9	A0A226MZN6	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.607
ASZ78_000325	ASZ78_000691	A0A226MU35	A0A226MJ62	Uncharacterized protein.	Uncharacterized protein.	0.983
ASZ78_000325	ASZ78_006094	A0A226MU35	A0A226MZN6	Uncharacterized protein.	Uncharacterized protein.	0.857
ASZ78_000325	ASZ78_006560	A0A226MU35	A0A226NBF1	Uncharacterized protein.	Uncharacterized protein.	0.461
ASZ78_000325	ASZ78_009527	A0A226MU35	A0A226NNF6	Uncharacterized protein.	Uncharacterized protein.	0.441
ASZ78_000325	ASZ78_012539	A0A226MU35	A0A226MGC9	Uncharacterized protein.	Uncharacterized protein.	0.441
ASZ78_000325	ASZ78_012761	A0A226MU35	A0A226MD23	Uncharacterized protein.	Uncharacterized protein.	0.441
ASZ78_000325	ASZ78_014286	A0A226MU35	A0A226NNA6	Uncharacterized protein.	Uncharacterized protein.	0.628
ASZ78_000333	ASZ78_006094	A0A226M730	A0A226MZN6	Uncharacterized protein.	Uncharacterized protein.	0.889
ASZ78_000338	ASZ78_006094	A0A226MC48	A0A226MZN6	BTB domain-containing protein.	Uncharacterized protein.	0.430
ASZ78_000380	ASZ78_001822	A0A226N6M0	A0A226MZ09	Uncharacterized protein.	Uncharacterized protein.	0.428
ASZ78_000380	ASZ78_004426	A0A226N6M0	A0A226NEG9	Uncharacterized protein.	Uncharacterized protein.	0.452
ASZ78_000380	ASZ78_006094	A0A226N6M0	A0A226MZN6	Uncharacterized protein.	Uncharacterized protein.	0.716
ASZ78_000380	ASZ78_008181	A0A226N6M0	A0A226NAU6	Uncharacterized protein.	Uncharacterized protein.	0.495
ASZ78_000380	ASZ78_012121	A0A226N6M0	A0A226MKS0	Uncharacterized protein.	PDZ domain-containing protein.	0.452
ASZ78_000380	ASZ78_012122	A0A226N6M0	A0A226MKP6	Uncharacterized protein.	Uncharacterized protein.	0.452
ASZ78_000380	ASZ78_012124	A0A226N6M0	A0A226MKQ2	Uncharacterized protein.	Uncharacterized protein.	0.452
ASZ78_000400	ASZ78_006094	A0A226NL95	A0A226MZN6	PH domain-containing protein.	Uncharacterized protein.	0.565
ASZ78_000691	ASZ78_000325	A0A226MJ62	A0A226MU35	Uncharacterized protein.	Uncharacterized protein.	0.983
ASZ78_000691	ASZ78_006094	A0A226MJ62	A0A226MZN6	Uncharacterized protein.	Uncharacterized protein.	0.864