(10 nodes) Serine biosynthesis network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_008023	Uncharacterized protein. (516 aa)
	ASZ78_015661	Uncharacterized protein. (462 aa)
	ASZ78_007019	Uncharacterized protein. (253 aa)
	ASZ78_012057	RFX-type winged-helix domain-containing protein. (1367 aa)
	ASZ78_004585	Uncharacterized protein. (468 aa)
	ASZ78_012510	PALP domain-containing protein. (264 aa)
	ASZ78_000150	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (525 aa)
	ASZ78_006123	Uncharacterized protein. (472 aa)
	ASZ78_003162	Phosphoserine aminotransferase. (371 aa)
	ASZ78_003204	Uncharacterized protein. (456 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000150	ASZ78_003162	A0A226MRA5	A0A226MK73	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Phosphoserine aminotransferase.	0.996
ASZ78_000150	ASZ78_007019	A0A226MRA5	A0A226MQT0	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.856
ASZ78_000150	ASZ78_012510	A0A226MRA5	A0A226MS09	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	PALP domain-containing protein.	0.671
ASZ78_003162	ASZ78_000150	A0A226MK73	A0A226MRA5	Phosphoserine aminotransferase.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.996
ASZ78_003162	ASZ78_007019	A0A226MK73	A0A226MQT0	Phosphoserine aminotransferase.	Uncharacterized protein.	0.987
ASZ78_007019	ASZ78_000150	A0A226MQT0	A0A226MRA5	Uncharacterized protein.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.856
ASZ78_007019	ASZ78_003162	A0A226MQT0	A0A226MK73	Uncharacterized protein.	Phosphoserine aminotransferase.	0.987
ASZ78_007019	ASZ78_012510	A0A226MQT0	A0A226MS09	Uncharacterized protein.	PALP domain-containing protein.	0.934
ASZ78_012510	ASZ78_000150	A0A226MS09	A0A226MRA5	PALP domain-containing protein.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.671
ASZ78_012510	ASZ78_007019	A0A226MS09	A0A226MQT0	PALP domain-containing protein.	Uncharacterized protein.	0.934