(96 nodes) Helix loop helix domain network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_001193	Uncharacterized protein. (169 aa)
	ASZ78_008640	BHLH domain-containing protein. (184 aa)
	ASZ78_003038	Uncharacterized protein. (186 aa)
	ASZ78_016612	BHLH domain-containing protein. (123 aa)
	ASZ78_002334	Uncharacterized protein. (157 aa)
	ASZ78_002333	Uncharacterized protein. (170 aa)
	ASZ78_007970	Uncharacterized protein. (692 aa)
	ASZ78_007734	BHLH domain-containing protein. (186 aa)
	ASZ78_016481	Uncharacterized protein. (255 aa)
	ASZ78_001706	BHLH domain-containing protein. (449 aa)
	ASZ78_012570	BHLH domain-containing protein. (160 aa)
	ASZ78_012571	BHLH domain-containing protein. (266 aa)
	ASZ78_001626	BHLH domain-containing protein. (455 aa)
	ASZ78_016334	Uncharacterized protein. (431 aa)
	ASZ78_014065	BHLH domain-containing protein. (246 aa)
	ASZ78_005253	Neurogenic differentiation factor. (337 aa)
	ASZ78_012130	BHLH domain-containing protein. (130 aa)
	ASZ78_005379	BHLH domain-containing protein. (218 aa)
	ASZ78_002526	IPT/TIG domain-containing protein. (356 aa)
	ASZ78_007157	Uncharacterized protein. (637 aa)
	ASZ78_007946	BHLH domain-containing protein. (899 aa)
	ASZ78_010669	Uncharacterized protein. (314 aa)
	ASZ78_008787	BHLH domain-containing protein. (161 aa)
	ASZ78_008786	Neurogenic differentiation factor. (330 aa)
	ASZ78_012006	BHLH domain-containing protein. (237 aa)
	ASZ78_007258	BHLH domain-containing protein. (3112 aa)
	ASZ78_009815	Uncharacterized protein. (161 aa)
	ASZ78_002937	BHLH domain-containing protein. (188 aa)
	ASZ78_000613	Uncharacterized protein. (745 aa)
	ASZ78_000599	BHLH domain-containing protein. (1003 aa)
	ASZ78_010158	BHLH domain-containing protein. (151 aa)
	ASZ78_001032	BHLH domain-containing protein. (348 aa)
	ASZ78_000527	BHLH domain-containing protein. (117 aa)
	ASZ78_003637	Uncharacterized protein. (227 aa)
	ASZ78_002447	Myogenic factor. (296 aa)
	ASZ78_001965	BHLH domain-containing protein. (216 aa)
	ASZ78_011682	COE1_HLH domain-containing protein. (211 aa)
	ASZ78_007003	BHLH domain-containing protein. (365 aa)
	ASZ78_015933	BHLH domain-containing protein. (169 aa)
	ASZ78_016524	BHLH domain-containing protein. (523 aa)
	ASZ78_004482	BHLH domain-containing protein. (213 aa)
	ASZ78_013518	BHLH domain-containing protein. (228 aa)
	ASZ78_014909	BHLH domain-containing protein. (205 aa)
	ASZ78_001992	BHLH domain-containing protein. (178 aa)
	ASZ78_000960	BHLH domain-containing protein. (338 aa)
	ASZ78_013019	BHLH domain-containing protein. (533 aa)
	ASZ78_011086	BHLH domain-containing protein. (125 aa)
	ASZ78_001456	Uncharacterized protein. (1101 aa)
	ASZ78_001269	Uncharacterized protein. (257 aa)
	ASZ78_003755	BHLH domain-containing protein. (192 aa)
	ASZ78_014338	Uncharacterized protein. (414 aa)
	ASZ78_015551	BHLH domain-containing protein. (180 aa)
	ASZ78_010233	BHLH domain-containing protein. (874 aa)
	ASZ78_010234	Uncharacterized protein. (642 aa)
	ASZ78_010745	Uncharacterized protein. (283 aa)
	ASZ78_000268	IPT/TIG domain-containing protein. (499 aa)
	ASZ78_006325	Uncharacterized protein. (795 aa)
	ASZ78_002309	Uncharacterized protein. (534 aa)
	ASZ78_000998	Uncharacterized protein. (402 aa)
	ASZ78_006181	BHLH domain-containing protein. (840 aa)
	ASZ78_006183	BHLH domain-containing protein. (236 aa)
	ASZ78_013177	BHLH domain-containing protein. (169 aa)
	ASZ78_008891	BHLH domain-containing protein. (189 aa)
	ASZ78_014169	Neurogenic differentiation factor. (357 aa)
	ASZ78_008890	BHLH domain-containing protein. (110 aa)
	ASZ78_008893	Uncharacterized protein. (859 aa)
	ASZ78_008678	BHLH domain-containing protein. (162 aa)
	ASZ78_016361	Uncharacterized protein. (711 aa)
	ASZ78_007595	BHLH domain-containing protein. (308 aa)
	ASZ78_008830	BHLH domain-containing protein. (163 aa)
	ASZ78_004166	BHLH domain-containing protein. (186 aa)
	ASZ78_014739	Uncharacterized protein. (257 aa)
	ASZ78_008974	Neurogenic differentiation factor. (355 aa)
	ASZ78_004185	BHLH domain-containing protein. (389 aa)
	ASZ78_002067	BHLH domain-containing protein. (730 aa)
	ASZ78_015889	BHLH domain-containing protein. (227 aa)
	ASZ78_005558	BHLH domain-containing protein. (519 aa)
	ASZ78_002779	BHLH domain-containing protein. (139 aa)
	ASZ78_005553	BHLH domain-containing protein. (220 aa)
	ASZ78_005494	BHLH domain-containing protein. (183 aa)
	ASZ78_016387	BHLH domain-containing protein. (124 aa)
	ASZ78_012274	BHLH domain-containing protein. (213 aa)
	ASZ78_010057	BHLH domain-containing protein. (273 aa)
	ASZ78_010036	BHLH domain-containing protein. (196 aa)
	ASZ78_014571	BHLH domain-containing protein. (409 aa)
	ASZ78_000493	BHLH domain-containing protein. (345 aa)
	ASZ78_014372	BHLH domain-containing protein. (157 aa)
	ASZ78_012935	BHLH domain-containing protein. (202 aa)
	ASZ78_012940	Nuclear receptor coactivator. (1408 aa)
	ASZ78_012841	BHLH domain-containing protein. (242 aa)
	ASZ78_002172	BHLH domain-containing protein. (1120 aa)
	ASZ78_014296	BHLH domain-containing protein. (301 aa)
	ASZ78_005364	BHLH domain-containing protein. (2226 aa)
	ASZ78_012842	BHLH domain-containing protein. (241 aa)
	ASZ78_005337	BHLH domain-containing protein. (139 aa)
	ASZ78_015721	BHLH domain-containing protein. (220 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000268	ASZ78_000527	A0A226N256	A0A226MTW4	IPT/TIG domain-containing protein.	BHLH domain-containing protein.	0.564
ASZ78_000268	ASZ78_005553	A0A226N256	A0A226NK08	IPT/TIG domain-containing protein.	BHLH domain-containing protein.	0.436
ASZ78_000268	ASZ78_007595	A0A226N256	A0A226N7H3	IPT/TIG domain-containing protein.	BHLH domain-containing protein.	0.412
ASZ78_000493	ASZ78_001032	A0A226NLE1	A0A226MSS0	BHLH domain-containing protein.	BHLH domain-containing protein.	0.873
ASZ78_000493	ASZ78_006325	A0A226NLE1	A0A226N285	BHLH domain-containing protein.	Uncharacterized protein.	0.873
ASZ78_000493	ASZ78_013019	A0A226NLE1	A0A226MXY1	BHLH domain-containing protein.	BHLH domain-containing protein.	0.873
ASZ78_000527	ASZ78_000268	A0A226MTW4	A0A226N256	BHLH domain-containing protein.	IPT/TIG domain-containing protein.	0.564
ASZ78_000527	ASZ78_001032	A0A226MTW4	A0A226MSS0	BHLH domain-containing protein.	BHLH domain-containing protein.	0.664
ASZ78_000527	ASZ78_005553	A0A226MTW4	A0A226NK08	BHLH domain-containing protein.	BHLH domain-containing protein.	0.506
ASZ78_000527	ASZ78_006325	A0A226MTW4	A0A226N285	BHLH domain-containing protein.	Uncharacterized protein.	0.664
ASZ78_000527	ASZ78_013019	A0A226MTW4	A0A226MXY1	BHLH domain-containing protein.	BHLH domain-containing protein.	0.664
ASZ78_000599	ASZ78_002309	A0A226MPF6	A0A226N2E9	BHLH domain-containing protein.	Uncharacterized protein.	0.480
ASZ78_000599	ASZ78_003755	A0A226MPF6	A0A226N171	BHLH domain-containing protein.	BHLH domain-containing protein.	0.693
ASZ78_000599	ASZ78_006183	A0A226MPF6	A0A226N3F5	BHLH domain-containing protein.	BHLH domain-containing protein.	0.693
ASZ78_000599	ASZ78_010158	A0A226MPF6	A0A226MQ60	BHLH domain-containing protein.	BHLH domain-containing protein.	0.695
ASZ78_000599	ASZ78_013518	A0A226MPF6	A0A226MX26	BHLH domain-containing protein.	BHLH domain-containing protein.	0.693
ASZ78_000599	ASZ78_014909	A0A226MPF6	A0A226MXD2	BHLH domain-containing protein.	BHLH domain-containing protein.	0.693
ASZ78_000599	ASZ78_016524	A0A226MPF6	A0A226MWD0	BHLH domain-containing protein.	BHLH domain-containing protein.	0.693
ASZ78_000613	ASZ78_001456	A0A226MP19	A0A226MZA5	Uncharacterized protein.	Uncharacterized protein.	0.724
ASZ78_000613	ASZ78_001706	A0A226MP19	A0A226MI26	Uncharacterized protein.	BHLH domain-containing protein.	0.724