(47 nodes) Fatty acid degradation network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_009417	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (278 aa)
	ASZ78_003154	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (320 aa)
	ASZ78_015977	Acyl-CoA_dh_1 domain-containing protein. (132 aa)
	ASZ78_001423	Acyl-CoA_dh_M domain-containing protein. (50 aa)
	ASZ78_007535	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
	ASZ78_003843	AMP-binding domain-containing protein. (557 aa)
	ASZ78_008886	AMP-binding domain-containing protein. (725 aa)
	ASZ78_007538	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (290 aa)
	ASZ78_002933	Acyl-CoA_dh_1 domain-containing protein. (113 aa)
	ASZ78_008490	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (872 aa)
	ASZ78_000516	AMP-binding domain-containing protein. (723 aa)
	ASZ78_008492	Thiolase_N domain-containing protein. (324 aa)
	ASZ78_002972	Uncharacterized protein. (481 aa)
	ASZ78_002013	ACB domain-containing protein. (365 aa)
	ASZ78_001375	Fe-ADH domain-containing protein. (445 aa)
	ASZ78_002872	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (486 aa)
	ASZ78_004723	PKS_ER domain-containing protein. (813 aa)
	ASZ78_014517	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (380 aa)
	ASZ78_009833	Uncharacterized protein. (373 aa)
	ASZ78_012752	ADH_N domain-containing protein. (111 aa)
	ASZ78_014364	Uncharacterized protein. (318 aa)
	ASZ78_016701	Acyl-CoA_dh_1 domain-containing protein. (231 aa)
	ASZ78_016739	AMP-binding domain-containing protein. (688 aa)
	ASZ78_002687	Uncharacterized protein. (537 aa)
	ASZ78_002688	Acyl-CoA_dh_1 domain-containing protein. (213 aa)
	ASZ78_012447	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (518 aa)
	ASZ78_010988	AMP-binding domain-containing protein. (675 aa)
	ASZ78_008587	Uncharacterized protein. (629 aa)
	ASZ78_014651	Uncharacterized protein. (601 aa)
	ASZ78_016991	Uncharacterized protein. (571 aa)
	ASZ78_001599	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (738 aa)
	ASZ78_014990	Uncharacterized protein. (406 aa)
	ASZ78_008710	Uncharacterized protein. (435 aa)
	ASZ78_016046	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (587 aa)
	ASZ78_000120	Uncharacterized protein. (344 aa)
	ASZ78_002087	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (519 aa)
	ASZ78_002088	APH domain-containing protein. (421 aa)
	ASZ78_016217	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (432 aa)
	ASZ78_015406	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (398 aa)
	ASZ78_015670	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (685 aa)
	ASZ78_006704	AMP-binding domain-containing protein. (652 aa)
	ASZ78_002319	Uncharacterized protein. (679 aa)
	ASZ78_007190	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (514 aa)
	ASZ78_013708	Uncharacterized protein. (1640 aa)
	ASZ78_016825	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (397 aa)
	ASZ78_012621	Uncharacterized protein. (859 aa)
	ASZ78_009696	AMP-binding_C domain-containing protein. (76 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000120	ASZ78_000516	A0A226NA36	A0A226MPX3	Uncharacterized protein.	AMP-binding domain-containing protein.	0.689
ASZ78_000120	ASZ78_001375	A0A226NA36	A0A226MIL2	Uncharacterized protein.	Fe-ADH domain-containing protein.	0.728
ASZ78_000120	ASZ78_001423	A0A226NA36	A0A226M9H5	Uncharacterized protein.	Acyl-CoA_dh_M domain-containing protein.	0.683
ASZ78_000120	ASZ78_001599	A0A226NA36	A0A226NCP2	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.960
ASZ78_000120	ASZ78_002013	A0A226NA36	A0A226MJE8	Uncharacterized protein.	ACB domain-containing protein.	0.948
ASZ78_000120	ASZ78_002087	A0A226NA36	A0A226N9J1	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.785
ASZ78_000120	ASZ78_002088	A0A226NA36	A0A226N9H7	Uncharacterized protein.	APH domain-containing protein.	0.658
ASZ78_000120	ASZ78_002319	A0A226NA36	A0A226N2F8	Uncharacterized protein.	Uncharacterized protein.	0.478
ASZ78_000120	ASZ78_002687	A0A226NA36	A0A226NF49	Uncharacterized protein.	Uncharacterized protein.	0.689
ASZ78_000120	ASZ78_002688	A0A226NA36	A0A226NEZ2	Uncharacterized protein.	Acyl-CoA_dh_1 domain-containing protein.	0.658
ASZ78_000120	ASZ78_002872	A0A226NA36	A0A226MHK4	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.634
ASZ78_000120	ASZ78_002933	A0A226NA36	A0A226MAK5	Uncharacterized protein.	Acyl-CoA_dh_1 domain-containing protein.	0.935
ASZ78_000120	ASZ78_003154	A0A226NA36	A0A226MBA7	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.861
ASZ78_000120	ASZ78_003843	A0A226NA36	A0A226MMH7	Uncharacterized protein.	AMP-binding domain-containing protein.	0.723
ASZ78_000120	ASZ78_006704	A0A226NA36	A0A226N395	Uncharacterized protein.	AMP-binding domain-containing protein.	0.655
ASZ78_000120	ASZ78_007190	A0A226NA36	A0A226N0U9	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.787
ASZ78_000120	ASZ78_007535	A0A226NA36	A0A226MPN9	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.958
ASZ78_000120	ASZ78_007538	A0A226NA36	A0A226MB72	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.861
ASZ78_000120	ASZ78_008490	A0A226NA36	A0A226MF29	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.962
ASZ78_000120	ASZ78_008492	A0A226NA36	A0A226MF02	Uncharacterized protein.	Thiolase_N domain-containing protein.	0.992