(63 nodes) Basal transcription factors network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_004115	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (195 aa)
	ASZ78_009658	Uncharacterized protein. (158 aa)
	ASZ78_001291	Uncharacterized protein. (316 aa)
	ASZ78_000826	Transcription initiation factor TFIID subunit. (1841 aa)
	ASZ78_013511	Uncharacterized protein. (779 aa)
	ASZ78_000286	BTP domain-containing protein. (312 aa)
	ASZ78_015507	RING-type domain-containing protein. (455 aa)
	ASZ78_004933	Helicase ATP-binding domain-containing protein. (685 aa)
	ASZ78_000573	TAFII55_N domain-containing protein. (358 aa)
	ASZ78_008875	Inhibitor of growth protein. (279 aa)
	ASZ78_009303	Uncharacterized protein. (179 aa)
	ASZ78_009301	Uncharacterized protein. (243 aa)
	ASZ78_010558	SWIM-type domain-containing protein. (175 aa)
	ASZ78_010559	Uncharacterized protein. (262 aa)
	ASZ78_010556	SWIM-type domain-containing protein. (666 aa)
	ASZ78_007050	Uncharacterized protein. (478 aa)
	ASZ78_014857	Uncharacterized protein. (71 aa)
	ASZ78_002307	CYCLIN domain-containing protein; Belongs to the cyclin family. (281 aa)
	ASZ78_009360	Uncharacterized protein. (142 aa)
	ASZ78_010581	Uncharacterized protein. (555 aa)
	ASZ78_004293	TFIIF_beta domain-containing protein. (64 aa)
	ASZ78_010460	Uncharacterized protein. (1837 aa)
	ASZ78_010461	Uncharacterized protein. (645 aa)
	ASZ78_005887	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	ASZ78_002458	Uncharacterized protein. (496 aa)
	ASZ78_012733	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (249 aa)
	ASZ78_003086	Uncharacterized protein. (87 aa)
	ASZ78_014477	Uncharacterized protein. (490 aa)
	ASZ78_011092	TFIID_20kDa domain-containing protein. (198 aa)
	ASZ78_007913	WD_REPEATS_REGION domain-containing protein. (912 aa)
	ASZ78_007457	Inhibitor of growth protein. (281 aa)
	ASZ78_000781	Uncharacterized protein. (738 aa)
	ASZ78_014947	General transcription factor IIH subunit. (383 aa)
	ASZ78_010197	TAFH domain-containing protein. (705 aa)
	ASZ78_013949	Uncharacterized protein. (228 aa)
	ASZ78_013790	THAP-type domain-containing protein. (731 aa)
	ASZ78_014493	Uncharacterized protein. (124 aa)
	ASZ78_006492	Uncharacterized protein. (255 aa)
	ASZ78_013727	TFIIB-type domain-containing protein. (316 aa)
	ASZ78_006975	Inhibitor of growth protein. (409 aa)
	ASZ78_015664	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (352 aa)
	ASZ78_002023	Uncharacterized protein. (152 aa)
	ASZ78_002025	Uncharacterized protein. (151 aa)
	ASZ78_001694	Uncharacterized protein. (205 aa)
	ASZ78_004974	Uncharacterized protein. (637 aa)
	ASZ78_005148	HTH TFE/IIEalpha-type domain-containing protein. (311 aa)
	ASZ78_016308	Uncharacterized protein. (80 aa)
	ASZ78_016304	Uncharacterized protein. (539 aa)
	ASZ78_016305	Uncharacterized protein. (637 aa)
	ASZ78_016306	Uncharacterized protein. (216 aa)
	ASZ78_016307	Uncharacterized protein. (363 aa)
	ASZ78_001551	FAD-binding PCMH-type domain-containing protein. (523 aa)
	ASZ78_001554	ING domain-containing protein. (227 aa)
	ASZ78_017094	Uncharacterized protein. (619 aa)
	ASZ78_011511	Stonin2_N domain-containing protein. (119 aa)
	ASZ78_011513	Uncharacterized protein. (188 aa)
	ASZ78_017109	Uncharacterized protein. (293 aa)
	ASZ78_011512	Uncharacterized protein; Belongs to the Stoned B family. (694 aa)
	ASZ78_011929	Uncharacterized protein. (970 aa)
	ASZ78_005573	TAFH domain-containing protein. (866 aa)
	ASZ78_000403	TAFII28 domain-containing protein. (141 aa)
	ASZ78_010035	Uncharacterized protein. (143 aa)
	ASZ78_005352	TFIIE-A_C domain-containing protein. (372 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000286	ASZ78_000403	A0A226MHS6	A0A226NL63	BTP domain-containing protein.	TAFII28 domain-containing protein.	0.999
ASZ78_000286	ASZ78_000573	A0A226MHS6	A0A226MPI2	BTP domain-containing protein.	TAFII55_N domain-containing protein.	0.994
ASZ78_000286	ASZ78_000826	A0A226MHS6	A0A226MFR6	BTP domain-containing protein.	Transcription initiation factor TFIID subunit.	0.994
ASZ78_000286	ASZ78_002023	A0A226MHS6	A0A226N911	BTP domain-containing protein.	Uncharacterized protein.	0.636
ASZ78_000286	ASZ78_002025	A0A226MHS6	A0A226N929	BTP domain-containing protein.	Uncharacterized protein.	0.636
ASZ78_000286	ASZ78_002307	A0A226MHS6	A0A226MR95	BTP domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.672
ASZ78_000286	ASZ78_002458	A0A226MHS6	A0A226MTV7	BTP domain-containing protein.	Uncharacterized protein.	0.662
ASZ78_000286	ASZ78_004115	A0A226MHS6	A0A226MCM8	BTP domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.787
ASZ78_000286	ASZ78_004293	A0A226MHS6	A0A226MRQ9	BTP domain-containing protein.	TFIIF_beta domain-containing protein.	0.899
ASZ78_000286	ASZ78_004933	A0A226MHS6	A0A226MJ88	BTP domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.670
ASZ78_000286	ASZ78_004974	A0A226MHS6	A0A226N9X5	BTP domain-containing protein.	Uncharacterized protein.	0.958
ASZ78_000286	ASZ78_005148	A0A226MHS6	A0A226NAG3	BTP domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.851
ASZ78_000286	ASZ78_005352	A0A226MHS6	A0A226NME7	BTP domain-containing protein.	TFIIE-A_C domain-containing protein.	0.862
ASZ78_000286	ASZ78_005573	A0A226MHS6	A0A226NK25	BTP domain-containing protein.	TAFH domain-containing protein.	0.993
ASZ78_000286	ASZ78_005887	A0A226MHS6	A0A226MSU6	BTP domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.916
ASZ78_000286	ASZ78_006492	A0A226MHS6	A0A226N511	BTP domain-containing protein.	Uncharacterized protein.	0.998
ASZ78_000286	ASZ78_009360	A0A226MHS6	A0A226MRJ7	BTP domain-containing protein.	Uncharacterized protein.	0.976
ASZ78_000286	ASZ78_010035	A0A226MHS6	A0A226NLP5	BTP domain-containing protein.	Uncharacterized protein.	0.935
ASZ78_000286	ASZ78_010197	A0A226MHS6	A0A226N175	BTP domain-containing protein.	TAFH domain-containing protein.	0.949
ASZ78_000286	ASZ78_010461	A0A226MHS6	A0A226MSK3	BTP domain-containing protein.	Uncharacterized protein.	0.996