(44 nodes) Ferroptosis network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_015129	Uncharacterized protein. (141 aa)
	ASZ78_010841	FAD-binding FR-type domain-containing protein. (509 aa)
	ASZ78_003723	KH domain-containing protein. (317 aa)
	ASZ78_010988	AMP-binding domain-containing protein. (675 aa)
	ASZ78_014830	Aamy domain-containing protein. (688 aa)
	ASZ78_001570	Ovotransferrin; Belongs to the transferrin family. (604 aa)
	ASZ78_008728	Ovotransferrin; Belongs to the transferrin family. (708 aa)
	ASZ78_014754	Ovotransferrin; Belongs to the transferrin family. (713 aa)
	ASZ78_016244	Uncharacterized protein. (636 aa)
	ASZ78_001015	N-acetyltransferase domain-containing protein. (182 aa)
	ASZ78_010785	Uncharacterized protein. (251 aa)
	ASZ78_006704	AMP-binding domain-containing protein. (652 aa)
	ASZ78_006383	Uncharacterized protein. (538 aa)
	ASZ78_009397	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily. (629 aa)
	ASZ78_000757	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (469 aa)
	ASZ78_001180	XK-related protein. (478 aa)
	ASZ78_001183	FAD-binding FR-type domain-containing protein. (564 aa)
	ASZ78_011190	Uncharacterized protein. (449 aa)
	ASZ78_012628	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. (152 aa)
	ASZ78_012427	Uncharacterized protein. (488 aa)
	ASZ78_002446	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. (278 aa)
	ASZ78_011574	Glutathione synthetase. (443 aa)
	ASZ78_006925	Uncharacterized protein. (398 aa)
	ASZ78_003923	Uncharacterized protein. (271 aa)
	ASZ78_000228	Uncharacterized protein. (467 aa)
	ASZ78_000229	Uncharacterized protein. (145 aa)
	ASZ78_016163	Uncharacterized protein. (125 aa)
	ASZ78_000516	AMP-binding domain-containing protein. (723 aa)
	ASZ78_008886	AMP-binding domain-containing protein. (725 aa)
	ASZ78_000931	Uncharacterized protein. (835 aa)
	ASZ78_013601	Uncharacterized protein; Belongs to the multicopper oxidase family. (1306 aa)
	ASZ78_005386	Uncharacterized protein; Belongs to the prion family. (265 aa)
	ASZ78_001785	Uncharacterized protein. (223 aa)
	ASZ78_001984	Uncharacterized protein. (218 aa)
	ASZ78_002857	Uncharacterized protein. (355 aa)
	ASZ78_014040	Uncharacterized protein. (121 aa)
	ASZ78_003327	Uncharacterized protein. (519 aa)
	ASZ78_006600	Autophagy protein 5; Involved in autophagic vesicle formation. (200 aa)
	ASZ78_010295	FAD-binding FR-type domain-containing protein. (571 aa)
	ASZ78_010297	XK-related protein. (403 aa)
	ASZ78_015744	Uncharacterized protein. (424 aa)
	ASZ78_015192	Uncharacterized protein. (405 aa)
	ASZ78_016739	AMP-binding domain-containing protein. (688 aa)
	ASZ78_004613	Uncharacterized protein. (283 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000228	ASZ78_014830	A0A226MQY5	A0A226NDU3	Uncharacterized protein.	Aamy domain-containing protein.	0.969
ASZ78_000228	ASZ78_015744	A0A226MQY5	A0A226NPH1	Uncharacterized protein.	Uncharacterized protein.	0.908
ASZ78_000229	ASZ78_014830	A0A226MQR8	A0A226NDU3	Uncharacterized protein.	Aamy domain-containing protein.	0.969
ASZ78_000516	ASZ78_006704	A0A226MPX3	A0A226N395	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.910
ASZ78_000516	ASZ78_008886	A0A226MPX3	A0A226MPW9	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.910
ASZ78_000516	ASZ78_010988	A0A226MPX3	A0A226NET7	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.916
ASZ78_000516	ASZ78_016739	A0A226MPX3	A0A226NIZ6	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.840
ASZ78_000757	ASZ78_001015	A0A226MYP6	A0A226N5M5	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	N-acetyltransferase domain-containing protein.	0.493
ASZ78_000757	ASZ78_016739	A0A226MYP6	A0A226NIZ6	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	AMP-binding domain-containing protein.	0.470
ASZ78_000931	ASZ78_001570	A0A226MPJ0	A0A226NCC8	Uncharacterized protein.	Ovotransferrin; Belongs to the transferrin family.	0.977
ASZ78_000931	ASZ78_002446	A0A226MPJ0	A0A226MTH3	Uncharacterized protein.	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.	0.801
ASZ78_000931	ASZ78_008728	A0A226MPJ0	A0A226NAY2	Uncharacterized protein.	Ovotransferrin; Belongs to the transferrin family.	0.891
ASZ78_000931	ASZ78_009397	A0A226MPJ0	A0A226MZY3	Uncharacterized protein.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.451
ASZ78_000931	ASZ78_012427	A0A226MPJ0	A0A226MTQ3	Uncharacterized protein.	Uncharacterized protein.	0.667
ASZ78_000931	ASZ78_012628	A0A226MPJ0	A0A226MWK5	Uncharacterized protein.	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.	0.866
ASZ78_000931	ASZ78_014754	A0A226MPJ0	A0A226N9P7	Uncharacterized protein.	Ovotransferrin; Belongs to the transferrin family.	0.891
ASZ78_000931	ASZ78_015192	A0A226MPJ0	A0A226NJQ4	Uncharacterized protein.	Uncharacterized protein.	0.442
ASZ78_001015	ASZ78_000757	A0A226N5M5	A0A226MYP6	N-acetyltransferase domain-containing protein.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.493
ASZ78_001183	ASZ78_001984	A0A226MY60	A0A226MK37	FAD-binding FR-type domain-containing protein.	Uncharacterized protein.	0.406
ASZ78_001570	ASZ78_000931	A0A226NCC8	A0A226MPJ0	Ovotransferrin; Belongs to the transferrin family.	Uncharacterized protein.	0.977