(88 nodes) Notch signaling pathway network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_008394	AXH domain-containing protein. (691 aa)
	ASZ78_007289	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (411 aa)
	ASZ78_017111	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (708 aa)
	ASZ78_014134	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1083 aa)
	ASZ78_011504	Uncharacterized protein. (487 aa)
	ASZ78_008602	Uncharacterized protein. (637 aa)
	ASZ78_002758	Uncharacterized protein. (297 aa)
	ASZ78_012989	Uncharacterized protein. (488 aa)
	ASZ78_011895	Hist_deacetyl domain-containing protein. (426 aa)
	ASZ78_014232	TLDc domain-containing protein. (152 aa)
	ASZ78_014233	LysM domain-containing protein. (629 aa)
	ASZ78_013078	Uncharacterized protein. (256 aa)
	ASZ78_004357	Uncharacterized protein. (2454 aa)
	ASZ78_006544	Uncharacterized protein. (410 aa)
	ASZ78_012547	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (366 aa)
	ASZ78_006109	WD_REPEATS_REGION domain-containing protein. (455 aa)
	ASZ78_013347	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (393 aa)
	ASZ78_007268	Uncharacterized protein. (103 aa)
	ASZ78_004530	Uncharacterized protein. (651 aa)
	ASZ78_002333	Uncharacterized protein. (170 aa)
	ASZ78_002334	Uncharacterized protein. (157 aa)
	ASZ78_005248	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (334 aa)
	ASZ78_015592	Uncharacterized protein. (716 aa)
	ASZ78_007430	BHLH domain-containing protein. (63 aa)
	ASZ78_001193	Uncharacterized protein. (169 aa)
	ASZ78_005698	Uncharacterized protein. (2538 aa)
	ASZ78_004691	Beta-1,3-N-acetylglucosaminyltransferase. (341 aa)
	ASZ78_015307	DUF3456 domain-containing protein. (147 aa)
	ASZ78_007121	Uncharacterized protein. (257 aa)
	ASZ78_012132	Ncstrn_small domain-containing protein. (720 aa)
	ASZ78_015308	DUF3456 domain-containing protein. (75 aa)
	ASZ78_015211	DUF4205 domain-containing protein. (246 aa)
	ASZ78_016367	AXH domain-containing protein. (798 aa)
	ASZ78_009815	Uncharacterized protein. (161 aa)
	ASZ78_015437	Uncharacterized protein. (136 aa)
	ASZ78_000565	Hist_deacetyl domain-containing protein. (374 aa)
	ASZ78_016483	Uncharacterized protein. (192 aa)
	ASZ78_016484	VWFD domain-containing protein. (524 aa)
	ASZ78_016485	Uncharacterized protein. (315 aa)
	ASZ78_016486	Uncharacterized protein. (513 aa)
	ASZ78_000158	Uncharacterized protein. (2143 aa)
	ASZ78_000157	Uncharacterized protein. (263 aa)
	ASZ78_010669	Uncharacterized protein. (314 aa)
	ASZ78_015436	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (351 aa)
	ASZ78_012416	RING-type domain-containing protein. (709 aa)
	ASZ78_003637	Uncharacterized protein. (227 aa)
	ASZ78_003815	Uncharacterized protein. (309 aa)
	ASZ78_004782	MamL-1 domain-containing protein. (1051 aa)
	ASZ78_012652	Uncharacterized protein. (631 aa)
	ASZ78_007061	Uncharacterized protein. (140 aa)
	ASZ78_008081	TLE_N domain-containing protein. (247 aa)
	ASZ78_008080	Uncharacterized protein. (593 aa)
	ASZ78_007059	Uncharacterized protein. (590 aa)
	ASZ78_008086	Uncharacterized protein. (686 aa)
	ASZ78_000952	Uncharacterized protein. (2345 aa)
	ASZ78_001250	Uncharacterized protein. (711 aa)
	ASZ78_014440	Beta-1,3-N-acetylglucosaminyltransferase. (352 aa)
	ASZ78_001269	Uncharacterized protein. (257 aa)
	ASZ78_013577	Uncharacterized protein. (364 aa)
	ASZ78_013683	Uncharacterized protein. (116 aa)
	ASZ78_008444	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (691 aa)
	ASZ78_013575	Uncharacterized protein. (208 aa)
	ASZ78_013682	Uncharacterized protein. (114 aa)
	ASZ78_010745	Uncharacterized protein. (283 aa)
	ASZ78_010377	Uncharacterized protein. (228 aa)
	ASZ78_010376	Uncharacterized protein. (380 aa)
	ASZ78_009861	Uncharacterized protein. (590 aa)
	ASZ78_010515	Uncharacterized protein. (714 aa)
	ASZ78_013186	Uncharacterized protein. (827 aa)
	ASZ78_008052	Uncharacterized protein. (765 aa)
	ASZ78_014957	Uncharacterized protein. (724 aa)
	ASZ78_014970	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (454 aa)
	ASZ78_008679	LysM domain-containing protein. (200 aa)
	ASZ78_008678	BHLH domain-containing protein. (162 aa)
	ASZ78_008677	TLDc domain-containing protein. (595 aa)
	ASZ78_006864	Uncharacterized protein. (557 aa)
	ASZ78_003095	VWFD domain-containing protein. (652 aa)
	ASZ78_003094	Uncharacterized protein. (309 aa)
	ASZ78_001921	Uncharacterized protein. (481 aa)
	ASZ78_001038	Uncharacterized protein. (467 aa)
	ASZ78_001925	PID domain-containing protein. (670 aa)
	ASZ78_009008	Uncharacterized protein. (723 aa)
	ASZ78_014739	Uncharacterized protein. (257 aa)
	ASZ78_002014	Uncharacterized protein. (2300 aa)
	ASZ78_016263	Uncharacterized protein. (569 aa)
	ASZ78_006575	Uncharacterized protein. (3105 aa)
	ASZ78_007366	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (428 aa)
	ASZ78_015212	Uncharacterized protein. (126 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000157	ASZ78_000952	A0A226MS23	A0A226MYG1	Uncharacterized protein.	Uncharacterized protein.	0.584
ASZ78_000157	ASZ78_001038	A0A226MS23	A0A226N7B5	Uncharacterized protein.	Uncharacterized protein.	0.982
ASZ78_000157	ASZ78_001250	A0A226MS23	A0A226N064	Uncharacterized protein.	Uncharacterized protein.	0.925
ASZ78_000157	ASZ78_001269	A0A226MS23	A0A226N0C4	Uncharacterized protein.	Uncharacterized protein.	0.492
ASZ78_000157	ASZ78_001921	A0A226MS23	A0A226N6Z6	Uncharacterized protein.	Uncharacterized protein.	0.931
ASZ78_000157	ASZ78_001925	A0A226MS23	A0A226N7U7	Uncharacterized protein.	PID domain-containing protein.	0.827
ASZ78_000157	ASZ78_002334	A0A226MS23	A0A226MDL8	Uncharacterized protein.	Uncharacterized protein.	0.494
ASZ78_000157	ASZ78_004357	A0A226MS23	A0A226MGM4	Uncharacterized protein.	Uncharacterized protein.	0.557
ASZ78_000157	ASZ78_004530	A0A226MS23	A0A226MDU4	Uncharacterized protein.	Uncharacterized protein.	0.967
ASZ78_000157	ASZ78_004691	A0A226MS23	A0A226NIT0	Uncharacterized protein.	Beta-1,3-N-acetylglucosaminyltransferase.	0.930
ASZ78_000157	ASZ78_004782	A0A226MS23	A0A226MVR7	Uncharacterized protein.	MamL-1 domain-containing protein.	0.702
ASZ78_000157	ASZ78_005248	A0A226MS23	A0A226MCQ1	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.672
ASZ78_000157	ASZ78_005698	A0A226MS23	A0A226NHG9	Uncharacterized protein.	Uncharacterized protein.	0.923
ASZ78_000157	ASZ78_006864	A0A226MS23	A0A226N6P5	Uncharacterized protein.	Uncharacterized protein.	0.684
ASZ78_000157	ASZ78_007059	A0A226MS23	A0A226MXD6	Uncharacterized protein.	Uncharacterized protein.	0.532
ASZ78_000157	ASZ78_007061	A0A226MS23	A0A226MX62	Uncharacterized protein.	Uncharacterized protein.	0.532
ASZ78_000157	ASZ78_007121	A0A226MS23	A0A226MKH9	Uncharacterized protein.	Uncharacterized protein.	0.904
ASZ78_000157	ASZ78_008444	A0A226MS23	A0A226N1G3	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.959
ASZ78_000157	ASZ78_008602	A0A226MS23	A0A226NEG3	Uncharacterized protein.	Uncharacterized protein.	0.928
ASZ78_000157	ASZ78_008678	A0A226MS23	A0A226N692	Uncharacterized protein.	BHLH domain-containing protein.	0.601