(12 nodes) Shigellosis network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_001077	Uncharacterized protein. (176 aa)
	ASZ78_013564	Uncharacterized protein. (671 aa)
	ASZ78_008933	Uncharacterized protein. (138 aa)
	ASZ78_012273	Uncharacterized protein. (197 aa)
	ASZ78_015236	Chromo domain-containing protein. (82 aa)
	ASZ78_003818	UBIQUITIN_CONJUGAT_2 domain-containing protein. (97 aa)
	ASZ78_005096	Uncharacterized protein. (1253 aa)
	ASZ78_003918	Uncharacterized protein. (475 aa)
	ASZ78_009080	Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration. (267 aa)
	ASZ78_012480	CC2-LZ domain-containing protein. (335 aa)
	ASZ78_004807	CC2-LZ domain-containing protein. (561 aa)
	ASZ78_012481	Uncharacterized protein. (158 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001077	ASZ78_008933	A0A226MZK7	A0A226N801	Uncharacterized protein.	Uncharacterized protein.	0.726
ASZ78_001077	ASZ78_015236	A0A226MZK7	A0A226MAM8	Uncharacterized protein.	Chromo domain-containing protein.	0.725
ASZ78_008933	ASZ78_001077	A0A226N801	A0A226MZK7	Uncharacterized protein.	Uncharacterized protein.	0.726
ASZ78_012480	ASZ78_012481	A0A226MW45	A0A226MW52	CC2-LZ domain-containing protein.	Uncharacterized protein.	0.488
ASZ78_012481	ASZ78_012480	A0A226MW52	A0A226MW45	Uncharacterized protein.	CC2-LZ domain-containing protein.	0.488
ASZ78_015236	ASZ78_001077	A0A226MAM8	A0A226MZK7	Chromo domain-containing protein.	Uncharacterized protein.	0.725