(15 nodes) Amoebiasis network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_008735	Calponin-homology (CH) domain-containing protein. (1093 aa)
	ASZ78_008557	Uncharacterized protein. (488 aa)
	ASZ78_008556	Calponin-homology (CH) domain-containing protein. (529 aa)
	ASZ78_012658	Calponin-homology (CH) domain-containing protein. (519 aa)
	ASZ78_004484	Uncharacterized protein. (824 aa)
	ASZ78_004487	Calponin-homology (CH) domain-containing protein. (171 aa)
	IL12B	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (293 aa)
	ASZ78_012824	Miff domain-containing protein. (89 aa)
	ASZ78_008564	Uncharacterized protein. (81 aa)
	ASZ78_011580	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (175 aa)
	ASZ78_016655	Uncharacterized protein. (734 aa)
	ASZ78_009401	Fibrillar collagen NC1 domain-containing protein. (286 aa)
	ASZ78_016013	MACPF domain-containing protein. (529 aa)
	ASZ78_016014	MACPF domain-containing protein. (431 aa)
	ASZ78_016510	Calponin-homology (CH) domain-containing protein. (468 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_004484	ASZ78_004487	A0A226MW72	A0A226MW57	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.898
ASZ78_004487	ASZ78_004484	A0A226MW57	A0A226MW72	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.898
ASZ78_008556	ASZ78_008557	A0A226NEA0	A0A226NE94	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.899
ASZ78_008557	ASZ78_008556	A0A226NE94	A0A226NEA0	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.899
ASZ78_008557	ASZ78_012658	A0A226NE94	A0A226MWN2	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.510
ASZ78_008557	ASZ78_016510	A0A226NE94	A0A226MX97	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.475
ASZ78_011580	ASZ78_012824	A0A226NFS4	A0A226MFY4	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Miff domain-containing protein.	0.407
ASZ78_012658	ASZ78_008557	A0A226MWN2	A0A226NE94	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.510
ASZ78_012824	ASZ78_011580	A0A226MFY4	A0A226NFS4	Miff domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.407
ASZ78_016013	ASZ78_016014	A0A226NAK1	A0A226NAP0	MACPF domain-containing protein.	MACPF domain-containing protein.	0.862
ASZ78_016014	ASZ78_016013	A0A226NAP0	A0A226NAK1	MACPF domain-containing protein.	MACPF domain-containing protein.	0.862
ASZ78_016510	ASZ78_008557	A0A226MX97	A0A226NE94	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.475