(20 nodes) Tuberculosis network (Callipepla squamata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASZ78_011910	CBFD_NFYB_HMF domain-containing protein. (342 aa)
	ASZ78_011580	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (175 aa)
	ASZ78_004622	Protein kinase domain-containing protein. (231 aa)
	ASZ78_006110	Ig-like domain-containing protein. (135 aa)
	ASZ78_003157	MHC_II_beta domain-containing protein. (138 aa)
	ASZ78_005762	Ig-like domain-containing protein. (247 aa)
	ASZ78_009502	RFXA_RFXANK_bdg domain-containing protein. (205 aa)
	ASZ78_017087	CCAAT/enhancer-binding protein. (279 aa)
	ASZ78_003978	ANK_REP_REGION domain-containing protein. (223 aa)
	ASZ78_001639	Uncharacterized protein. (346 aa)
	ASZ78_014329	Protein kinase domain-containing protein. (680 aa)
	ASZ78_007159	RFX5_N domain-containing protein. (356 aa)
	ASZ78_002850	Uncharacterized protein. (429 aa)
	ASZ78_010137	Coronin; Belongs to the WD repeat coronin family. (535 aa)
	IL12B	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (293 aa)
	ASZ78_004495	Coronin; Belongs to the WD repeat coronin family. (511 aa)
	ASZ78_008168	ANK_REP_REGION domain-containing protein. (229 aa)
	ASZ78_004074	BZIP domain-containing protein. (150 aa)
	ASZ78_015341	Coronin; Belongs to the WD repeat coronin family. (644 aa)
	ASZ78_015713	CBFD_NFYB_HMF domain-containing protein. (181 aa)

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001639	ASZ78_003978	A0A226MIU2	A0A226MHS8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.408
ASZ78_001639	ASZ78_007159	A0A226MIU2	A0A226MKN3	Uncharacterized protein.	RFX5_N domain-containing protein.	0.556
ASZ78_001639	ASZ78_011910	A0A226MIU2	A0A226NFN1	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.999
ASZ78_001639	ASZ78_015713	A0A226MIU2	A0A226NNF7	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.999
ASZ78_003157	ASZ78_005762	A0A226M9X8	A0A226MCY7	MHC_II_beta domain-containing protein.	Ig-like domain-containing protein.	0.878
ASZ78_003157	ASZ78_006110	A0A226M9X8	A0A226M6R0	MHC_II_beta domain-containing protein.	Ig-like domain-containing protein.	0.878
ASZ78_003978	ASZ78_001639	A0A226MHS8	A0A226MIU2	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.408
ASZ78_003978	ASZ78_007159	A0A226MHS8	A0A226MKN3	ANK_REP_REGION domain-containing protein.	RFX5_N domain-containing protein.	0.998
ASZ78_003978	ASZ78_009502	A0A226MHS8	A0A226MF88	ANK_REP_REGION domain-containing protein.	RFXA_RFXANK_bdg domain-containing protein.	0.989
ASZ78_003978	ASZ78_011910	A0A226MHS8	A0A226NFN1	ANK_REP_REGION domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.588
ASZ78_004074	ASZ78_017087	A0A226N2N3	A0A226MH09	BZIP domain-containing protein.	CCAAT/enhancer-binding protein.	0.868
ASZ78_005762	ASZ78_003157	A0A226MCY7	A0A226M9X8	Ig-like domain-containing protein.	MHC_II_beta domain-containing protein.	0.878
ASZ78_006110	ASZ78_003157	A0A226M6R0	A0A226M9X8	Ig-like domain-containing protein.	MHC_II_beta domain-containing protein.	0.878
ASZ78_007159	ASZ78_001639	A0A226MKN3	A0A226MIU2	RFX5_N domain-containing protein.	Uncharacterized protein.	0.556
ASZ78_007159	ASZ78_003978	A0A226MKN3	A0A226MHS8	RFX5_N domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.998
ASZ78_007159	ASZ78_008168	A0A226MKN3	A0A226MXZ3	RFX5_N domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.752
ASZ78_007159	ASZ78_009502	A0A226MKN3	A0A226MF88	RFX5_N domain-containing protein.	RFXA_RFXANK_bdg domain-containing protein.	0.998
ASZ78_007159	ASZ78_015713	A0A226MKN3	A0A226NNF7	RFX5_N domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.407
ASZ78_008168	ASZ78_007159	A0A226MXZ3	A0A226MKN3	ANK_REP_REGION domain-containing protein.	RFX5_N domain-containing protein.	0.752
ASZ78_008168	ASZ78_009502	A0A226MXZ3	A0A226MF88	ANK_REP_REGION domain-containing protein.	RFXA_RFXANK_bdg domain-containing protein.	0.909