(62 nodes) Nucleotide excision repair network (Colinus virginianus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H355_000310	Uncharacterized protein. (297 aa)
	H355_011520	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (785 aa)
	H355_014088	Ssl1 domain-containing protein. (279 aa)
	H355_014855	AAA domain-containing protein. (1724 aa)
	H355_014097	CBFD_NFYB_HMF domain-containing protein. (109 aa)
	H355_013655	Uncharacterized protein. (196 aa)
	H355_011311	PPIase cyclophilin-type domain-containing protein. (101 aa)
	H355_011115	Uncharacterized protein. (461 aa)
	H355_005418	F-box domain-containing protein. (918 aa)
	H355_009824	CBFD_NFYB_HMF domain-containing protein. (135 aa)
	H355_011164	CPSF_A domain-containing protein. (1133 aa)
	H355_008881	Rep_fac_C domain-containing protein. (198 aa)
	H355_009346	Protein kinase domain-containing protein. (409 aa)
	H355_007869	Uncharacterized protein. (169 aa)
	H355_001054	RING-type domain-containing protein. (108 aa)
	H355_002871	MAT1 domain-containing protein. (307 aa)
	H355_010632	CULLIN_2 domain-containing protein; Belongs to the cullin family. (825 aa)
	H355_002124	COS domain-containing protein. (141 aa)
	H355_011327	Uncharacterized protein. (440 aa)
	H355_002123	Uncharacterized protein. (69 aa)
	H355_003631	Uncharacterized protein. (259 aa)
	H355_014958	Zf-rbx1 domain-containing protein. (141 aa)
	H355_017058	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (371 aa)
	H355_007397	Uncharacterized protein. (252 aa)
	H355_005695	Uncharacterized protein. (467 aa)
	H355_008842	TFIIIC_sub6 domain-containing protein. (265 aa)
	H355_004483	Uncharacterized protein. (548 aa)
	H355_007398	Ubiquitin-like domain-containing protein. (106 aa)
	H355_014575	Uncharacterized protein. (1439 aa)
	H355_000076	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
	H355_003646	RPA_C domain-containing protein. (292 aa)
	H355_012931	Uncharacterized protein. (103 aa)
	H355_000288	C2H2-type domain-containing protein. (1503 aa)
	H355_014129	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2268 aa)
	H355_014174	AAA domain-containing protein. (329 aa)
	H355_002587	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
	H355_000598	Uncharacterized protein. (1333 aa)
	H355_006697	XPGI domain-containing protein. (1455 aa)
	H355_011289	AAA domain-containing protein. (374 aa)
	H355_011262	Uncharacterized protein. (129 aa)
	H355_004268	Helicase ATP-binding domain-containing protein. (1010 aa)
	H355_014928	CULLIN_2 domain-containing protein; Belongs to the cullin family. (678 aa)
	H355_005575	CBFD_NFYB_HMF domain-containing protein. (143 aa)
	H355_016890	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (336 aa)
	H355_008793	Uncharacterized protein. (712 aa)
	H355_010317	XPA_C domain-containing protein. (237 aa)
	H355_001647	Uncharacterized protein. (355 aa)
	H355_004413	Uncharacterized protein. (540 aa)
	H355_004025	C2H2-type domain-containing protein. (1415 aa)
	H355_015086	Uncharacterized protein. (404 aa)
	H355_001236	Uncharacterized protein. (96 aa)
	H355_016090	Uncharacterized protein. (152 aa)
	H355_016088	Uncharacterized protein. (152 aa)
	H355_015908	Uncharacterized protein. (171 aa)
	H355_013079	Uncharacterized protein. (71 aa)
	H355_002998	Replication factor C subunit 1. (1184 aa)
	H355_001327	Uncharacterized protein. (820 aa)
	H355_003912	CYCLIN domain-containing protein; Belongs to the cyclin family. (281 aa)
	H355_000717	AAA domain-containing protein. (362 aa)
	H355_000396	ERCC4 domain-containing protein. (892 aa)
	H355_009305	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (362 aa)
	H355_007936	Uncharacterized protein. (452 aa)

Your Current Organism:

Colinus virginianus

NCBI taxonomy Id: 9014
Other names: C. virginianus, bobwhite quail, common bobwhite, northern bobwhite

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H355_000076	H355_000396	A0A226P436	A0A226PSN1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	ERCC4 domain-containing protein.	0.897
H355_000076	H355_000717	A0A226P436	A0A226PSR4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	AAA domain-containing protein.	0.999
H355_000076	H355_001054	A0A226P436	A0A226NWN1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	RING-type domain-containing protein.	0.691
H355_000076	H355_001236	A0A226P436	A0A226PZH9	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.740
H355_000076	H355_001327	A0A226P436	A0A226PTJ0	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.650
H355_000076	H355_001647	A0A226P436	A0A226PPL8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.999
H355_000076	H355_002998	A0A226P436	A0A226PUJ9	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Replication factor C subunit 1.	0.998
H355_000076	H355_003646	A0A226P436	A0A226P5R6	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	RPA_C domain-containing protein.	0.941
H355_000076	H355_004268	A0A226P436	A0A226PK30	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Helicase ATP-binding domain-containing protein.	0.834
H355_000076	H355_004413	A0A226P436	A0A226PQ61	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.901
H355_000076	H355_005418	A0A226P436	A0A226NRF4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	F-box domain-containing protein.	0.970
H355_000076	H355_005575	A0A226P436	A0A226PKK9	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	CBFD_NFYB_HMF domain-containing protein.	0.854
H355_000076	H355_005695	A0A226P436	A0A226P1G6	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.999
H355_000076	H355_006697	A0A226P436	A0A226PE57	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	XPGI domain-containing protein.	0.970
H355_000076	H355_007397	A0A226P436	A0A226P126	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.796
H355_000076	H355_007398	A0A226P436	A0A226P2K8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ubiquitin-like domain-containing protein.	0.796
H355_000076	H355_007936	A0A226P436	A0A226PS37	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.513
H355_000076	H355_008793	A0A226P436	A0A226PNP6	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.665
H355_000076	H355_008881	A0A226P436	A0A226NUY5	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Rep_fac_C domain-containing protein.	0.988
H355_000076	H355_009305	A0A226P436	A0A226PSA4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.	0.906