(5 nodes) Urea cycle, and MGS-like domain network (Gallus gallus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CPS1	Uncharacterized protein. (1446 aa)
	ARG2	Arginase. (356 aa)
	OTC	Ornithine carbamoyltransferase, mitochondrial. (354 aa)
	ASL1	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily. (501 aa)
	OAT	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (439 aa)

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARG2	ASL1	ENSGALP00000015485	ENSGALP00000039143	Arginase.	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	0.754
ARG2	CPS1	ENSGALP00000015485	ENSGALP00000004647	Arginase.	Uncharacterized protein.	0.633
ARG2	OAT	ENSGALP00000015485	ENSGALP00000053373	Arginase.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.999
ARG2	OTC	ENSGALP00000015485	ENSGALP00000026160	Arginase.	Ornithine carbamoyltransferase, mitochondrial.	0.996
ASL1	ARG2	ENSGALP00000039143	ENSGALP00000015485	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	Arginase.	0.754
ASL1	CPS1	ENSGALP00000039143	ENSGALP00000004647	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	Uncharacterized protein.	0.688
ASL1	OAT	ENSGALP00000039143	ENSGALP00000053373	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.987
ASL1	OTC	ENSGALP00000039143	ENSGALP00000026160	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	Ornithine carbamoyltransferase, mitochondrial.	0.811
CPS1	ARG2	ENSGALP00000004647	ENSGALP00000015485	Uncharacterized protein.	Arginase.	0.633
CPS1	ASL1	ENSGALP00000004647	ENSGALP00000039143	Uncharacterized protein.	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	0.688
CPS1	OAT	ENSGALP00000004647	ENSGALP00000053373	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.696
CPS1	OTC	ENSGALP00000004647	ENSGALP00000026160	Uncharacterized protein.	Ornithine carbamoyltransferase, mitochondrial.	0.998
OAT	ARG2	ENSGALP00000053373	ENSGALP00000015485	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Arginase.	0.999
OAT	ASL1	ENSGALP00000053373	ENSGALP00000039143	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	0.987
OAT	CPS1	ENSGALP00000053373	ENSGALP00000004647	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.696
OAT	OTC	ENSGALP00000053373	ENSGALP00000026160	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Ornithine carbamoyltransferase, mitochondrial.	0.984
OTC	ARG2	ENSGALP00000026160	ENSGALP00000015485	Ornithine carbamoyltransferase, mitochondrial.	Arginase.	0.996
OTC	ASL1	ENSGALP00000026160	ENSGALP00000039143	Ornithine carbamoyltransferase, mitochondrial.	Delta-1 crystallin; Delta crystallin, the principal crystallin in embryonic lens, is found only in birds and reptiles; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.	0.811
OTC	CPS1	ENSGALP00000026160	ENSGALP00000004647	Ornithine carbamoyltransferase, mitochondrial.	Uncharacterized protein.	0.998
OTC	OAT	ENSGALP00000026160	ENSGALP00000053373	Ornithine carbamoyltransferase, mitochondrial.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.984