20 items (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RNPC3	RNA binding region (RNP1, RRM) containing 3. (550 aa)
	SF3B3	Splicing factor 3b subunit 3. (1217 aa)
	RBM41	RNA binding motif protein 41. (398 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	SF3B1	Splicing factor 3b subunit 1. (1301 aa)
	ZMAT5	C3H1-type domain-containing protein. (170 aa)
	ZCRB1	Uncharacterized protein. (216 aa)
	PHF5A	Uncharacterized protein. (110 aa)
	SF3B4	Splicing factor 3b subunit 4. (418 aa)
	DHX15	Uncharacterized protein. (762 aa)
	SF3B6	Splicing factor 3b subunit 6. (91 aa)
	ZRSR2	Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (333 aa)
	PDCD7	Programmed cell death 7. (434 aa)
	SNRNP25	Small nuclear ribonucleoprotein U11/U12 subunit 25. (129 aa)
	SNRNP48	Small nuclear ribonucleoprotein U11/U12 subunit 48. (306 aa)
	SF3B5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	SNRPF	Sm domain-containing protein. (86 aa)
	SNRPGP15	Small nuclear ribonucleoprotein G. (76 aa)
	SNRNP35	RRM domain-containing protein. (263 aa)

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	PHF5A	ENSGALP00000023214	ENSGALP00000019471	Uncharacterized protein.	Uncharacterized protein.	0.674
DHX15	RBM41	ENSGALP00000023214	ENSGALP00000007706	Uncharacterized protein.	RNA binding motif protein 41.	0.671
DHX15	RNPC3	ENSGALP00000023214	ENSGALP00000008278	Uncharacterized protein.	RNA binding region (RNP1, RRM) containing 3.	0.671
DHX15	SF3B1	ENSGALP00000023214	ENSGALP00000013029	Uncharacterized protein.	Splicing factor 3b subunit 1.	0.900
DHX15	SF3B3	ENSGALP00000023214	ENSGALP00000003978	Uncharacterized protein.	Splicing factor 3b subunit 3.	0.822
DHX15	SF3B4	ENSGALP00000023214	ENSGALP00000021749	Uncharacterized protein.	Splicing factor 3b subunit 4.	0.744
DHX15	SF3B5	ENSGALP00000023214	ENSGALP00000048790	Uncharacterized protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.607
DHX15	SF3B6	ENSGALP00000023214	ENSGALP00000026567	Uncharacterized protein.	Splicing factor 3b subunit 6.	0.587
DHX15	SNRNP35	ENSGALP00000023214	ENSGALP00000069819	Uncharacterized protein.	RRM domain-containing protein.	0.488
DHX15	SNRNP48	ENSGALP00000023214	ENSGALP00000045019	Uncharacterized protein.	Small nuclear ribonucleoprotein U11/U12 subunit 48.	0.511
DHX15	SNRPD1	ENSGALP00000023214	ENSGALP00000051821	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.943
DHX15	SNRPD3	ENSGALP00000023214	ENSGALP00000010633	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.950
DHX15	SNRPF	ENSGALP00000023214	ENSGALP00000061684	Uncharacterized protein.	Sm domain-containing protein.	0.954
DHX15	SNRPGP15	ENSGALP00000023214	ENSGALP00000067004	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.941
DHX15	ZCRB1	ENSGALP00000023214	ENSGALP00000015516	Uncharacterized protein.	Uncharacterized protein.	0.477
DHX15	ZMAT5	ENSGALP00000023214	ENSGALP00000013088	Uncharacterized protein.	C3H1-type domain-containing protein.	0.475
PDCD7	SF3B4	ENSGALP00000033158	ENSGALP00000021749	Programmed cell death 7.	Splicing factor 3b subunit 4.	0.443
PDCD7	SNRNP25	ENSGALP00000033158	ENSGALP00000042421	Programmed cell death 7.	Small nuclear ribonucleoprotein U11/U12 subunit 25.	0.838
PDCD7	SNRNP35	ENSGALP00000033158	ENSGALP00000069819	Programmed cell death 7.	RRM domain-containing protein.	0.928
PDCD7	SNRNP48	ENSGALP00000033158	ENSGALP00000045019	Programmed cell death 7.	Small nuclear ribonucleoprotein U11/U12 subunit 48.	0.847