10 items (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CPSF2	Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
	CPSF4L	Uncharacterized protein. (193 aa)
	CPSF4	Uncharacterized protein. (243 aa)
	FIP1L1	Fip1 domain-containing protein. (545 aa)
	PCF11	PCF11 cleavage and polyadenylation factor subunit. (1690 aa)
	CPSF6	Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (582 aa)
	POLR2I	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
	CPSF7	Cleavage and polyadenylation specific factor 7. (533 aa)
	CSTF2	RRM domain-containing protein. (573 aa)
	NUDT21	Nudix hydrolase domain-containing protein. (473 aa)

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPSF2	CPSF4	ENSGALP00000017517	ENSGALP00000007498	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.998
CPSF2	CPSF4L	ENSGALP00000017517	ENSGALP00000007054	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.922
CPSF2	CPSF6	ENSGALP00000017517	ENSGALP00000049306	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.909
CPSF2	CPSF7	ENSGALP00000017517	ENSGALP00000054155	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specific factor 7.	0.918
CPSF2	CSTF2	ENSGALP00000017517	ENSGALP00000072327	Cleavage and polyadenylation specificity factor subunit 2.	RRM domain-containing protein.	0.994
CPSF2	FIP1L1	ENSGALP00000017517	ENSGALP00000022557	Cleavage and polyadenylation specificity factor subunit 2.	Fip1 domain-containing protein.	0.997
CPSF2	NUDT21	ENSGALP00000017517	ENSGALP00000072673	Cleavage and polyadenylation specificity factor subunit 2.	Nudix hydrolase domain-containing protein.	0.945
CPSF2	PCF11	ENSGALP00000017517	ENSGALP00000027831	Cleavage and polyadenylation specificity factor subunit 2.	PCF11 cleavage and polyadenylation factor subunit.	0.999
CPSF4	CPSF2	ENSGALP00000007498	ENSGALP00000017517	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.998
CPSF4	CPSF6	ENSGALP00000007498	ENSGALP00000049306	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.835
CPSF4	CPSF7	ENSGALP00000007498	ENSGALP00000054155	Uncharacterized protein.	Cleavage and polyadenylation specific factor 7.	0.912
CPSF4	CSTF2	ENSGALP00000007498	ENSGALP00000072327	Uncharacterized protein.	RRM domain-containing protein.	0.986
CPSF4	FIP1L1	ENSGALP00000007498	ENSGALP00000022557	Uncharacterized protein.	Fip1 domain-containing protein.	0.993
CPSF4	NUDT21	ENSGALP00000007498	ENSGALP00000072673	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.926
CPSF4	PCF11	ENSGALP00000007498	ENSGALP00000027831	Uncharacterized protein.	PCF11 cleavage and polyadenylation factor subunit.	0.966
CPSF4L	CPSF2	ENSGALP00000007054	ENSGALP00000017517	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.922
CPSF4L	CSTF2	ENSGALP00000007054	ENSGALP00000072327	Uncharacterized protein.	RRM domain-containing protein.	0.901
CPSF4L	FIP1L1	ENSGALP00000007054	ENSGALP00000022557	Uncharacterized protein.	Fip1 domain-containing protein.	0.747
CPSF4L	NUDT21	ENSGALP00000007054	ENSGALP00000072673	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.728
CPSF4L	PCF11	ENSGALP00000007054	ENSGALP00000027831	Uncharacterized protein.	PCF11 cleavage and polyadenylation factor subunit.	0.672