(5 nodes) Autophagosome membrane docking network (Gallus gallus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VMP1	Vacuole membrane protein 1. (406 aa)
	STX17	t-SNARE coiled-coil homology domain-containing protein. (302 aa)
	ATG14	Autophagy related 14. (492 aa)
	SNAP29	t-SNARE coiled-coil homology domain-containing protein. (248 aa)
	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Isoform SERCA2A is involved in the regulation of the contraction/relaxation cycle. May act as a regulator of TNFSF11-mediated Ca(2+) signaling during osteoclastogenesis. (1042 aa)

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG14	SNAP29	ENSGALP00000019815	ENSGALP00000048299	Autophagy related 14.	t-SNARE coiled-coil homology domain-containing protein.	0.983
ATG14	STX17	ENSGALP00000019815	ENSGALP00000074169	Autophagy related 14.	t-SNARE coiled-coil homology domain-containing protein.	0.988
ATG14	VMP1	ENSGALP00000019815	ENSGALP00000008272	Autophagy related 14.	Vacuole membrane protein 1.	0.727
SNAP29	ATG14	ENSGALP00000048299	ENSGALP00000019815	t-SNARE coiled-coil homology domain-containing protein.	Autophagy related 14.	0.983
SNAP29	STX17	ENSGALP00000048299	ENSGALP00000074169	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.999
SNAP29	VMP1	ENSGALP00000048299	ENSGALP00000008272	t-SNARE coiled-coil homology domain-containing protein.	Vacuole membrane protein 1.	0.453
STX17	ATG14	ENSGALP00000074169	ENSGALP00000019815	t-SNARE coiled-coil homology domain-containing protein.	Autophagy related 14.	0.988
STX17	SNAP29	ENSGALP00000074169	ENSGALP00000048299	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.999
STX17	VMP1	ENSGALP00000074169	ENSGALP00000008272	t-SNARE coiled-coil homology domain-containing protein.	Vacuole membrane protein 1.	0.428
VMP1	ATG14	ENSGALP00000008272	ENSGALP00000019815	Vacuole membrane protein 1.	Autophagy related 14.	0.727
VMP1	SNAP29	ENSGALP00000008272	ENSGALP00000048299	Vacuole membrane protein 1.	t-SNARE coiled-coil homology domain-containing protein.	0.453
VMP1	STX17	ENSGALP00000008272	ENSGALP00000074169	Vacuole membrane protein 1.	t-SNARE coiled-coil homology domain-containing protein.	0.428