STRINGSTRING
PHOX2B PHOX2B FGF8 FGF8 FGF2 FGF2 SIX4 SIX4 IFT88 IFT88 GABRA5 GABRA5 LRRC1 LRRC1 MYO6 MYO6 TTC39C TTC39C CYTL1 CYTL1 MSX1 MSX1 E1C1Y1_CHICK E1C1Y1_CHICK AHI1 AHI1 JAG2 JAG2 BCL2 BCL2 IGF1 IGF1 EDN1 EDN1 ROR1 ROR1 DFNA5 DFNA5 PTPRQ PTPRQ TRIP11 TRIP11 TTC8 TTC8 TSHR TSHR CLRN1 CLRN1 LGR5 LGR5 EDNRA EDNRA PROX1 PROX1 LRIG3 LRIG3 KCNK2 KCNK2 USH2A USH2A MYO3B MYO3B DLX5 DLX5 JAG1 JAG1 NEUROD1 NEUROD1 WDPCP WDPCP SLC26A5 SLC26A5 C1QTNF5 C1QTNF5 CXCL14 CXCL14 USH1C USH1C MCM2 MCM2 PAFAH1B1 PAFAH1B1 CCM2 CCM2 ADAM10 ADAM10 LOC427439 LOC427439 OCM OCM PRRX1 PRRX1 FRZB FRZB PCDH15 PCDH15 LHX3 LHX3 STRA6 STRA6 MAPKAPK2 MAPKAPK2 ENSGALP00000073923 ENSGALP00000073923 PDZD7 PDZD7 SLC4A7 SLC4A7 OTX1 OTX1 ATG4B ATG4B OSR1 OSR1 RDH10 RDH10 LOC107050371 LOC107050371 WHRN WHRN KCNQ1 KCNQ1 ADGRV1 ADGRV1 BCL2L11 BCL2L11 DLX6 DLX6 ENSGALP00000069955 ENSGALP00000069955 CTHRC1 CTHRC1 RPGRIP1L RPGRIP1L GATA3 GATA3 ENSGALP00000068651 ENSGALP00000068651 DLL1 DLL1 RARG RARG REST REST ENSGALP00000066624 ENSGALP00000066624 TPRN TPRN NKX3-2 NKX3-2 GRXCR2 GRXCR2 EEF1E1 EEF1E1 MKS1 MKS1 IFT20 IFT20 C1QB C1QB SLITRK6 SLITRK6 GSC GSC WDR19 WDR19 LHX4 LHX4 CECR2 CECR2 CEBPD CEBPD NBL1 NBL1 TBX2 TBX2 WNT3A WNT3A CHD7 CHD7 SLC17A8 SLC17A8 MYO3A MYO3A ALDH1A3 ALDH1A3 SOBP SOBP FOXG1 FOXG1 ZIC1 ZIC1 GBX2 GBX2 LOC427025 LOC427025 EYA1 EYA1 FREM2 FREM2 BMPER BMPER SEC24B SEC24B ATG5 ATG5 LRTOMT LRTOMT OTOP1 OTOP1 SOX21 SOX21 ENSGALP00000048186 ENSGALP00000048186 OSR2 OSR2 ENSGALP00000047771 ENSGALP00000047771 CHD9 CHD9 SIX1 SIX1 OC90 OC90 USH1G USH1G SOX2 SOX2 TBX3 TBX3 NAGLU NAGLU FZD3 FZD3 SIX2 SIX2 MPV17 MPV17 NTN1 NTN1 PDZD7-2 PDZD7-2 DFNB59 DFNB59 SOX9 SOX9 RARB RARB GRXCR1 GRXCR1 LRIG1 LRIG1
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PHOX2BPaired like homeobox 2B. (292 aa)
FGF8Fibroblast growth factor 8; Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration. Involved in initiation, outgrowth and patterning of the limbs; Belongs to the heparin-binding growth factors family. (214 aa)
FGF2Fibroblast growth factor 2; Acts as a ligand for FGFR1, FGFR2, FGFR3 and FGFR4. Also acts as an integrin ligand which is required for FGF2 signaling. Plays an important role in the regulation of cell survival, cell division, cell differentiation and cell migration. Functions as a potent mitogen in vitro. Can induce angiogenesis; Belongs to the heparin-binding growth factors family. (158 aa)
SIX4SIX homeobox 4. (776 aa)
IFT88Intraflagellar transport 88. (817 aa)
GABRA5Gamma-aminobutyric acid type A receptor alpha5 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (373 aa)
LRRC1Leucine rich repeat containing 1. (797 aa)
MYO6Unconventional myosin-VI; Myosins are actin-based motor molecules with ATPase activity (By similarity). Unconventional myosins serve in intracellular movements (By similarity). Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments (By similarity). Has slow rate of actin-activated ADP release due to weak ATP binding (By similarity). Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration (By similarity). Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-su [...] (1276 aa)
TTC39CTetratricopeptide repeat domain 39C. (576 aa)
CYTL1Cytokine like 1. (132 aa)
MSX1Homeobox protein GHOX-7; Probably plays a role in patterning events during embryonic limb development. May also be involved in programmed cell death. (288 aa)
E1C1Y1_CHICKUncharacterized protein. (351 aa)
AHI1Abelson helper integration site 1. (1242 aa)
JAG2Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1300 aa)
BCL2Apoptosis regulator Bcl-2; Suppresses apoptosis in a variety of cell systems including factor-dependent lymphohematopoietic and neural cells. Regulates cell death by controlling the mitochondrial membrane permeability. Appears to function in a feedback loop system with caspases. Inhibits caspase activity either by preventing the release of cytochrome c from the mitochondria and/or by binding to the apoptosis-activating factor (APAF-1). (233 aa)
IGF1Insulin-like growth factor I; The insulin-like growth factors, isolated from plasma, are structurally and functionally related to insulin but have a much higher growth-promoting activity. Acts as a ligand for IGF1R. Binds to the alpha subunit of IGF1R, leading to the activation of the intrinsic tyrosine kinase activity which autophosphorylates tyrosine residues in the beta subunit thus initiatiating a cascade of down-stream signaling events leading to activation of the PI3K-AKT/PKB and the Ras-MAPK pathways. Binds to integrins. Its binding to integrins and subsequent ternary complex fo [...] (153 aa)
EDN1Endothelin 1. (194 aa)
ROR1Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. ROR subfamily. (896 aa)
DFNA5Uncharacterized protein. (505 aa)
PTPRQProtein tyrosine phosphatase receptor type Q. (2308 aa)
TRIP11Thyroid hormone receptor interactor 11. (1980 aa)
TTC8Tetratricopeptide repeat domain 8. (567 aa)
TSHRThyrotropin receptor; Receptor for the thyroid-stimulating hormone (TSH) or thyrotropin. Also acts as a receptor for the heterodimeric glycoprotein hormone (GPHA2:GPHB5) or thyrostimulin. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Plays a central role in controlling thyroid cell metabolism. Belongs to the G-protein coupled receptor 1 family. FSH/LSH/TSH subfamily. (761 aa)
CLRN1Clarin 1. (232 aa)
LGR5Leucine rich repeat containing G protein-coupled receptor 5. (909 aa)
EDNRAEndothelin receptor type A; Belongs to the G-protein coupled receptor 1 family. (421 aa)
PROX1Prospero homeobox protein 1; Transcription factor which may be involved in developmental processes such as cell fate determination, gene transcriptional regulation and progenitor cell regulation in a number of organs. May be essential in the development and function of the eye. May play a role in the regulation of the circadian rhythm by repressing the expression of clock genes; Belongs to the Prospero homeodomain family. (736 aa)
LRIG3Uncharacterized protein. (1099 aa)
KCNK2Potassium two pore domain channel subfamily K member 2; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (411 aa)
USH2AUsherin. (5190 aa)
MYO3BMyosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1287 aa)
DLX5Homeobox protein DLX-5; Transcriptional factor involved in bone development. Could be involved in apical ectodermal ridge activity, pattern formation, and cartilage differentiation. Binds to DNA; Belongs to the distal-less homeobox family. (286 aa)
JAG1Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1216 aa)
NEUROD1Neurogenic differentiation factor 1; Acts as a transcriptional activator. Mediates transcriptional activation by binding to E box-containing promoter. Acts as a differentiation factor during neurogenesis. Induces photoreceptor cell overproduction in vivo and de novo generation in vitro. May play a role in photoreceptor cell production. Binds DNA on E-box consensus sequence 5'-CANNTG-3'. (357 aa)
WDPCPWD repeat containing planar cell polarity effector. (807 aa)
SLC26A5Prestin. (742 aa)
C1QTNF5C1q and TNF related 5. (585 aa)
CXCL14Jun-suppressed chemokine. (98 aa)
USH1CUSH1 protein network component harmonin. (556 aa)
MCM2DNA helicase; Belongs to the MCM family. (929 aa)
PAFAH1B1Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration. (410 aa)
CCM2PID domain-containing protein. (453 aa)
ADAM10Uncharacterized protein. (749 aa)
LOC427439Nipped-B protein. (2783 aa)
OCMParvalbumin, thymic CPV3; Binds two calcium ions. (109 aa)
PRRX1Paired mesoderm homeobox protein 1; May participate in maintenance of mesenchymal cell lineages derived from both mesoderm and the neural crest and in patterning of the limbs and the face. (245 aa)
FRZBSecreted frizzled-related protein 3; Soluble frizzled-related proteins (sFRPS) function as modulators of Wnt signaling through direct interaction with Wnts. They have a role in regulating cell growth and differentiation in specific cell types. SFRP3/FRZB appears to be involved in limb skeletogenesis. Antagonist of Wnt8 signaling. Regulates chondrocyte maturation and long bone development. (315 aa)
PCDH15Protocadherin-15; Calcium-dependent cell-adhesion protein. Required for inner ear neuroepithelial cell elaboration and cochlear function. Probably involved in the maintenance of normal retinal function (By similarity). (2192 aa)
LHX3LIM/homeobox protein Lhx3; Transcriptional factor that defines subclasses of motoneurons that segregate into columns in the spinal cord and select distinct axon pathways. Acts in conjunction with LIM-1, ISL-1 and ISL-2. (395 aa)
STRA6Uncharacterized protein. (671 aa)
MAPKAPK2MAPK activated protein kinase 2; Belongs to the protein kinase superfamily. (395 aa)
ENSGALP00000073923Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (324 aa)
PDZD7PDZ domain-containing protein. (413 aa)
SLC4A7Anion exchange protein. (1243 aa)
OTX1Orthodenticle homeobox 1. (335 aa)
ATG4BCysteine protease ATG4B; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. Cleaves the C-terminal amino acid of ATG8 family proteins to reveal a C-terminal glycine. Exposure of the glycine at the C-terminus is essential for ATG8 proteins conjugation to phosphatidylethanolamine (PE). Has also an activity of delipidating enzyme for the PE-conjugated forms (By similarity). (393 aa)
OSR1Uncharacterized protein. (260 aa)
RDH10Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (446 aa)
LOC107050371Uncharacterized protein. (1015 aa)
WHRNWhirlin. (926 aa)
KCNQ1Potassium voltage-gated channel subfamily Q member 1; Belongs to the potassium channel family. (863 aa)
ADGRV1Uncharacterized protein. (4788 aa)
BCL2L11BCL2 like 11. (179 aa)
DLX6Homeobox domain-containing protein. (283 aa)
ENSGALP00000069955Uncharacterized protein. (496 aa)
CTHRC1Collagen triple helix repeat containing 1. (314 aa)
RPGRIP1LRPGRIP1 like. (1273 aa)
GATA3GATA-binding factor 3; Transcriptional activator which probably serves as a general switch factor for cell-specific development. It binds to DNA sites with the consensus sequence 5'-[AT]GATA[AG]-3' within regulatory regions of genes. (444 aa)
ENSGALP00000068651Uncharacterized protein. (150 aa)
DLL1Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (893 aa)
RARGRetinoic acid receptor gamma. (490 aa)
RESTUncharacterized protein. (339 aa)
ENSGALP00000066624Uncharacterized protein. (187 aa)
TPRNPhostensin domain-containing protein. (125 aa)
NKX3-2Homeobox domain-containing protein. (275 aa)
GRXCR2Glutaredoxin and cysteine rich domain containing 2. (132 aa)
EEF1E1Biogenesis of lysosome-related organelles complex 1 subunit 5; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking (By similarity); Belongs to the BLOC1S5 family. (221 aa)
MKS1MKS transition zone complex subunit 1. (562 aa)
IFT20Intraflagellar transport 20. (132 aa)
C1QBComplement C1q B chain. (244 aa)
SLITRK6SLIT and NTRK like family member 6. (840 aa)
GSCHomeobox protein goosecoid; Involved in the development of the organizer region in the gastrula (Hensen node in chicken). (346 aa)
WDR19WD_REPEATS_REGION domain-containing protein. (470 aa)
LHX4LIM homeobox 4. (533 aa)
CECR2Bromo domain-containing protein. (1531 aa)
CEBPDCCAAT enhancer binding protein delta. (302 aa)
NBL1Neuroblastoma suppressor of tumorigenicity 1; May act as a tumor suppressor. (194 aa)
TBX2T-box transcription factor 2. (693 aa)
WNT3AProtein Wnt-3a; [Isoform 1]: Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Functions in the canonical Wnt signaling pathway that results in activation of transcription factors of the TCF/LEF family. Regulates chick apical ectodermal ridge formation. Required for normal embryonic mesoderm development and formation of caudal somites. Required for normal morphogenesis of the developing neural tube (By similarity). ECO:0000250|UniProtKB:P56704. (376 aa)
CHD7Chromodomain-helicase-DNA-binding protein 7; Probable transcription regulator. Maybe involved in the in 45S precursor rRNA production (By similarity). (3009 aa)
SLC17A8MFS domain-containing protein. (587 aa)
MYO3AMyosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1632 aa)
ALDH1A3Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (512 aa)
SOBPSine oculis-binding protein homolog; Implicated in development of the cochlea. (873 aa)
FOXG1Forkhead box protein G1; May determine the nasotemporal axis of the retina, and consequently specify the topographical projection of the retinal ganglion-cell axons to the tectum by controlling expression of their target genes. (451 aa)
ZIC1Zinc finger protein ZIC 1; Acts as a transcriptional activator. Involved in neurogenesis. Plays important roles in the early stage of organogenesis of the CNS, as well as during dorsal spinal cord development and maturation of the cerebellum. Binds to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3' (By similarity). (444 aa)
GBX2Homeobox protein GBX-2; May act as a transcription factor for cell pluripotency and differentiation in the embryo. (339 aa)
LOC427025Nipped-B protein. (2769 aa)
EYA1Eyes absent homolog 1; Functions both as protein phosphatase and as transcriptional coactivator for SIX1, and probably also for other transcription factors of this family. Tyrosine phosphatase that dephosphorylates 'Tyr-142' of histone H2AX (H2AXY142ph) and promotes efficient DNA repair via the recruitment of DNA repair complexes containing MDC1. 'Tyr-142' phosphorylation of histone H2AX plays a central role in DNA repair and acts as a mark that distinguishes between apoptotic and repair responses to genotoxic stress. Its function as histone phosphatase may contribute to its function i [...] (625 aa)
FREM2FRAS1 related extracellular matrix 2. (3168 aa)
BMPERCrossveinless-2. (678 aa)
SEC24BUncharacterized protein. (1234 aa)
ATG5Autophagy protein 5; Involved in autophagic vesicle formation. (288 aa)
LRTOMTUncharacterized protein. (259 aa)
OTOP1Otopetrin 1. (609 aa)
SOX21Transcription factor SOX-21; Acts as a negative regulator of transcription. (280 aa)
ENSGALP00000048186Uncharacterized protein. (528 aa)
OSR2Uncharacterized protein. (412 aa)
ENSGALP00000047771Uncharacterized protein. (240 aa)
CHD9Chromodomain helicase DNA binding protein 9. (2820 aa)
SIX1Sine oculis-related homeobox 1 homolog. (282 aa)
OC90Otoconin. (524 aa)
USH1GUSH1 protein network component sans. (457 aa)
SOX2Transcription factor SOX-2; Transcriptional activator. Binds to the consensus DNA sequence 5'-TCATTGTTGTTG-3'. In cooperation with other transcription factors, binds to the promoter sequence of the crystallin gene to activate transcription in the lens. Downstream SRRT target that mediates the promotion of neural stem cell self-renewal (By similarity). Keeps neural cells undifferentiated by counteracting the activity of proneural proteins and suppresses neuronal differentiation. May function as a switch in neuronal development. (312 aa)
TBX3T-box transcription factor TBX3; Transcriptional repressor involved in developmental processes. Probably plays a role in limb pattern formation. (732 aa)
NAGLUN-acetyl-alpha-glucosaminidase. (751 aa)
FZD3Frizzled-3; Receptor for Wnt proteins. Most of frizzled receptors are coupled to the beta-catenin canonical signaling pathway, which leads to the activation of disheveled proteins, inhibition of GSK-3 kinase, nuclear accumulation of beta-catenin and activation of Wnt target genes. A second signaling pathway involving PKC and calcium fluxes has been seen for some family members, but it is not yet clear if it represents a distinct pathway or if it can be integrated in the canonical pathway, as PKC seems to be required for Wnt-mediated inactivation of GSK-3 kinase. Both pathways seem to i [...] (666 aa)
SIX2Sine oculis-related homeobox 2 homolog. (287 aa)
MPV17Mitochondrial inner membrane protein MPV17; Belongs to the peroxisomal membrane protein PXMP2/4 family. (256 aa)
NTN1Netrin-1; Netrins control guidance of CNS commissural axons and peripheral motor axons. Promotes neurite outgrowth from commissural axons but acts as a chemorepellent for trochlear motor axons. These effects are mediated by distinct receptors. (688 aa)
PDZD7-2Uncharacterized protein. (548 aa)
DFNB59Gasdermin domain-containing protein. (273 aa)
SOX9Transcription factor SOX-9; Transcription factor that selectively activates enhancer through its interaction with a DNA-binding partner factor. Activates enhancer of COL2A1 through its binding with DNA sequence 5'-ATTCAT-3'. In response to bone morphogenetic protein stimulus, phosphorylation is induced and then sumoylation, allowing cooperation with SNAI2 to trigger neural crest delamination. Functions at the level of mesenchymal cell condensation by inducing cartilage development in limbs and by changing the aggregation properties of limb mesenchymal cells. Regulates the cell fate dec [...] (494 aa)
RARBRetinoic acid receptor beta; Receptor for retinoic acid. Retinoic acid receptors bind as heterodimers to their target response elements in response to their ligands, all-trans or 9-cis retinoic acid, and regulate gene expression in various biological processes. The RAR/RXR heterodimers bind to the retinoic acid response elements (RARE) composed of tandem 5'-AGGTCA-3' sites known as DR1-DR5 (By similarity). Required for limb and craniofacial development. (455 aa)
GRXCR1Glutaredoxin and cysteine rich domain containing 1. (293 aa)
LRIG1Leucine rich repeats and immunoglobulin like domains 1. (1206 aa)
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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