12 items (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MYH11	Myosin-11; Muscle contraction; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1978 aa)
	ENSGALP00000073363	Calponin-homology (CH) domain-containing protein. (158 aa)
	LIMCH1	LIM zinc-binding domain-containing protein. (161 aa)
	STXBP5	Syntaxin binding protein 5. (1152 aa)
	SHROOM1	Uncharacterized protein. (1313 aa)
	MYL9	Myosin regulatory light chain 2, smooth muscle major isoform; Myosin regulatory subunit that plays an important role in regulation of both smooth muscle and nonmuscle cell contractile activity. Implicated in cytokinesis, receptor capping, and cell locomotion (By similarity). (172 aa)
	ENSGALP00000055314	DUF4757 domain-containing protein. (155 aa)
	MYL6	Myosin light polypeptide 6; Regulatory light chain of myosin. Does not bind calcium. (275 aa)
	STXBP5L	Syntaxin binding protein 5 like. (1184 aa)
	SHROOM4	Shroom family member 4. (1224 aa)
	LLGL1	LLGL scribble cell polarity complex component 1. (1234 aa)
	LLGL2	LLGL scribble cell polarity complex component 2. (1026 aa)

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGALP00000055314	ENSGALP00000073363	ENSGALP00000055314	ENSGALP00000073363	DUF4757 domain-containing protein.	Calponin-homology (CH) domain-containing protein.	0.900
ENSGALP00000055314	LIMCH1	ENSGALP00000055314	ENSGALP00000072569	DUF4757 domain-containing protein.	LIM zinc-binding domain-containing protein.	0.900
ENSGALP00000073363	ENSGALP00000055314	ENSGALP00000073363	ENSGALP00000055314	Calponin-homology (CH) domain-containing protein.	DUF4757 domain-containing protein.	0.900
ENSGALP00000073363	LIMCH1	ENSGALP00000073363	ENSGALP00000072569	Calponin-homology (CH) domain-containing protein.	LIM zinc-binding domain-containing protein.	0.900
LIMCH1	ENSGALP00000055314	ENSGALP00000072569	ENSGALP00000055314	LIM zinc-binding domain-containing protein.	DUF4757 domain-containing protein.	0.900
LIMCH1	ENSGALP00000073363	ENSGALP00000072569	ENSGALP00000073363	LIM zinc-binding domain-containing protein.	Calponin-homology (CH) domain-containing protein.	0.900
LLGL1	LLGL2	ENSGALP00000023237	ENSGALP00000013059	LLGL scribble cell polarity complex component 1.	LLGL scribble cell polarity complex component 2.	0.977
LLGL2	LLGL1	ENSGALP00000013059	ENSGALP00000023237	LLGL scribble cell polarity complex component 2.	LLGL scribble cell polarity complex component 1.	0.977
MYH11	MYL6	ENSGALP00000046782	ENSGALP00000051229	Myosin-11; Muscle contraction; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin light polypeptide 6; Regulatory light chain of myosin. Does not bind calcium.	0.998
MYH11	MYL9	ENSGALP00000046782	ENSGALP00000063190	Myosin-11; Muscle contraction; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin regulatory light chain 2, smooth muscle major isoform; Myosin regulatory subunit that plays an important role in regulation of both smooth muscle and nonmuscle cell contractile activity. Implicated in cytokinesis, receptor capping, and cell locomotion (By similarity).	0.998
MYL6	MYH11	ENSGALP00000051229	ENSGALP00000046782	Myosin light polypeptide 6; Regulatory light chain of myosin. Does not bind calcium.	Myosin-11; Muscle contraction; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.998
MYL6	MYL9	ENSGALP00000051229	ENSGALP00000063190	Myosin light polypeptide 6; Regulatory light chain of myosin. Does not bind calcium.	Myosin regulatory light chain 2, smooth muscle major isoform; Myosin regulatory subunit that plays an important role in regulation of both smooth muscle and nonmuscle cell contractile activity. Implicated in cytokinesis, receptor capping, and cell locomotion (By similarity).	0.997
MYL9	MYH11	ENSGALP00000063190	ENSGALP00000046782	Myosin regulatory light chain 2, smooth muscle major isoform; Myosin regulatory subunit that plays an important role in regulation of both smooth muscle and nonmuscle cell contractile activity. Implicated in cytokinesis, receptor capping, and cell locomotion (By similarity).	Myosin-11; Muscle contraction; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.998
MYL9	MYL6	ENSGALP00000063190	ENSGALP00000051229	Myosin regulatory light chain 2, smooth muscle major isoform; Myosin regulatory subunit that plays an important role in regulation of both smooth muscle and nonmuscle cell contractile activity. Implicated in cytokinesis, receptor capping, and cell locomotion (By similarity).	Myosin light polypeptide 6; Regulatory light chain of myosin. Does not bind calcium.	0.997
STXBP5	STXBP5L	ENSGALP00000067942	ENSGALP00000049526	Syntaxin binding protein 5.	Syntaxin binding protein 5 like.	0.554
STXBP5L	STXBP5	ENSGALP00000049526	ENSGALP00000067942	Syntaxin binding protein 5 like.	Syntaxin binding protein 5.	0.554