STRINGSTRING
HELLS HELLS SMYD3 SMYD3 HIST1H2B5L HIST1H2B5L HIST1H2B5 HIST1H2B5 HIST1H3G HIST1H3G H1-8 H1-8 NAP1L4 NAP1L4 UBTF UBTF HIST1H2B7 HIST1H2B7 HIST1H2BF HIST1H2BF CENPX CENPX LOC100859629 LOC100859629 CHAF1B CHAF1B HIST1H4B-6 HIST1H4B-6 KAT6B KAT6B SET SET CENPP CENPP KNTC1 KNTC1 CENPV CENPV KAT6A KAT6A TAF11 TAF11 DNAJC9 DNAJC9 BDP1 BDP1 CDC45 CDC45 TAF12 TAF12 DMC1 DMC1 DLGAP5 DLGAP5 TBPL2 TBPL2 HIST1H111L HIST1H111L HISTH1 HISTH1 BRF1 BRF1 CENPC CENPC NAP1L1 NAP1L1 HP1BP3 HP1BP3 F1NFV8_CHICK F1NFV8_CHICK ATRX ATRX TAF3 TAF3 SPTY2D1 SPTY2D1 MCM2 MCM2 SMARCB1 SMARCB1 DR1 DR1 HNF1B HNF1B TAF4 TAF4 HIST1H3H HIST1H3H HIST1H2BO HIST1H2BO HIST1H2B7L2 HIST1H2B7L2 CENPA CENPA HIST1H3A HIST1H3A TAF7 TAF7 RAD51 RAD51 RAD51C RAD51C BAZ1A BAZ1A GTF2H5 GTF2H5 HIST1H103 HIST1H103 RSF1 RSF1 HIST2H3A HIST2H3A CHRAC1 CHRAC1 TAF6L TAF6L H2AFY H2AFY HIST1H4B HIST1H4B SART3 SART3 HIST1H4B-2 HIST1H4B-2 POGZ POGZ CENPT CENPT NASP NASP H1-10 H1-10 ENSGALP00000054050 ENSGALP00000054050 HIST1H4B-3 HIST1H4B-3 HJURP HJURP TAF1C TAF1C CENPW CENPW TAF8 TAF8 ITGB3BP ITGB3BP CENPS CENPS POLE3 POLE3 CENPN CENPN SOX9 SOX9 OIP5 OIP5 CENPH CENPH H3F3C H3F3C BRF2 BRF2 CENPO CENPO MIS18A MIS18A CENPK CENPK CDT1 CDT1 GMNN GMNN CENPE CENPE SHPRH SHPRH CENPI CENPI HIST2H3A-2 HIST2H3A-2 HIST1H110 HIST1H110 LOC107053803 LOC107053803 LOC415780 LOC415780 ENSGALP00000055994 ENSGALP00000055994 PADI1 PADI1 HIST1H2B8 HIST1H2B8 HIST1H101 HIST1H101 H2BE1 H2BE1 RRN3 RRN3 HIST1H46 HIST1H46 GTF2A2 GTF2A2 CHAF1A CHAF1A GTF2B GTF2B TBP TBP POLR1E POLR1E H2AFY2 H2AFY2 SIRT6 SIRT6 RAD52 RAD52 TAF13 TAF13 H3F3B H3F3B HIST1H4B-4 HIST1H4B-4 RHOGL-2 RHOGL-2 HIST1H2B7L4 HIST1H2B7L4 HIST1H4B-5 HIST1H4B-5 TAF6 TAF6 ENSGALP00000067477 ENSGALP00000067477
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HELLSHelicase, lymphoid specific. (822 aa)
SMYD3SET and MYND domain containing 3. (487 aa)
HIST1H2B5LHistone H2B; Belongs to the histone H2B family. (126 aa)
HIST1H2B5Histone H2B 5; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (126 aa)
HIST1H3GHistone cluster 1 H3 family member g. (136 aa)
H1-8H1 histone family member O oocyte specific. (239 aa)
NAP1L4Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (403 aa)
UBTFUpstream binding transcription factor. (744 aa)
HIST1H2B7Histone cluster 1, H2B-VII (similar to human histone cluster 1, class H2B, member N). (126 aa)
HIST1H2BFHistone cluster 1, H2bf. (126 aa)
CENPXCentromere protein X; DNA-binding component of the Fanconi anemia (FA) core complex. Required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage. In complex with CENPS (MHF heterodimer), crucial cofactor for FANCM in both binding and ATP-dependent remodeling of DNA. Stabilizes FANCM. In complex with CENPS and FANCM (but not other FANC proteins), rapidly recruited to blocked forks and promotes gene conversion at blocked rep [...] (115 aa)
LOC100859629Histone H3.3-like. (136 aa)
CHAF1BChromatin assembly factor 1 subunit B; Complex that is thought to mediate chromatin assembly in DNA replication and DNA repair. Involved in rapid nucleosome formation during DNA replication (By similarity); Belongs to the WD repeat HIR1 family. (566 aa)
HIST1H4B-6Histone cluster 1, H4-IV, germinal H4-like 2. (103 aa)
KAT6BHistone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1842 aa)
SETUncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (277 aa)
CENPPCentromere protein P; Component of the CENPA-HI complex, a centromeric complex involved in assembly of kinetochore proteins, mitotic progression and chromosome segregation. (287 aa)
KNTC1Rod_C domain-containing protein. (398 aa)
CENPVGFA domain-containing protein. (207 aa)
KAT6AHistone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (2008 aa)
TAF11TAFII28 domain-containing protein. (217 aa)
DNAJC9J domain-containing protein. (260 aa)
BDP1SANT domain-containing protein. (2183 aa)
CDC45Cell division cycle 45. (566 aa)
TAF12TFIID_20kDa domain-containing protein. (161 aa)
DMC1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (328 aa)
DLGAP5DLG associated protein 5. (833 aa)
TBPL2TATA box binding protein-like 2. (328 aa)
HIST1H111LHistone H1.11R; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. (219 aa)
HISTH1Histone H1; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. (305 aa)
BRF1BRF1 RNA polymerase III transcription initiation factor subunit. (681 aa)
CENPCUncharacterized protein. (872 aa)
NAP1L1Nucleosome assembly protein 1 like 1; Belongs to the nucleosome assembly protein (NAP) family. (393 aa)
HP1BP3Heterochromatin protein 1-binding protein 3; Component of heterochromatin that maintains heterochromatin integrity during G1/S progression and regulates the duration of G1 phase to critically influence cell proliferative capacity. (559 aa)
F1NFV8_CHICKWSD domain-containing protein. (308 aa)
ATRXATRX chromatin remodeler. (2420 aa)
TAF3Transcription initiation factor TFIID subunit 3; Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Required in complex with TBPL2 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process (By similarity). (930 aa)
SPTY2D1Protein SPT2 homolog; Histone chaperone that stabilizes pre-existing histone tetramers and regulates replication-independent histone exchange on chromatin. Required for normal chromatin refolding in the coding region of transcribed genes, and for the suppression of spurious transcription. Binds DNA and histones and promotes nucleosome assembly (in vitro) (By similarity). Modulates RNA polymerase 1-mediated transcription. Required for optimal growth in the presence of the DNA damaging agents actinomycin D or mitomycin C (in vitro). Facilitates formation of tetrameric histone complexes c [...] (690 aa)
MCM2DNA helicase; Belongs to the MCM family. (929 aa)
SMARCB1SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Involved in chromatin-remodeling. Core component of the BAF (SWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex) and may play a role in neural development (By similarity). (386 aa)
DR1Protein Dr1; The association of the DR1/DRAP1 heterodimer with TBP results in a functional repression of both activated and basal transcription of class II genes. This interaction precludes the formation of a transcription-competent complex by inhibiting the association of TFIIA and/or TFIIB with TBP. Can bind to DNA on its own (By similarity). (176 aa)
HNF1BHNF1 homeobox B. (531 aa)
TAF4TATA-box binding protein associated factor 4. (1101 aa)
HIST1H3HHistone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
HIST1H2BOHistone H2B 1/2/3/4/6; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (126 aa)
HIST1H2B7L2Histone cluster 1, H2B-VII-like 2 (similar to human histone cluster 1, class H2B, member N). (126 aa)
CENPAHistone H3-like centromeric protein A; Histone H3-like nucleosomal protein that is specifically found in centromeric nucleosomes. Replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. The presence of CENPA subtly modifies the nucleosome structure and the way DNA is wrapped around the nucleosome and gives rise to protruding DNA ends that are less well- ordered and rigid compared to nucleosomes containing histone H3. May serve as an epigenetic mark that propagates centromere identity through replication and cell division (By simil [...] (131 aa)
HIST1H3AHistone cluster 1 H3 family member a. (136 aa)
TAF7TAFII55_N domain-containing protein. (353 aa)
RAD51DNA repair protein RAD51 homolog 1; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. (339 aa)
RAD51CRAD51 paralog C. (360 aa)
BAZ1AUncharacterized protein. (397 aa)
GTF2H5General transcription factor IIH subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFII [...] (71 aa)
HIST1H103Histone H1.03; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. (224 aa)
RSF1Remodeling and spacing factor 1. (1392 aa)
HIST2H3AHistone cluster 2 H3 family member d. (136 aa)
CHRAC1Chromatin accessibility complex subunit 1. (135 aa)
TAF6LTATA-box binding protein associated factor 6 like. (604 aa)
H2AFYCore histone macro-H2A.1; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post- translational modifications of histones, also called histone code, and nucleosome remodeling. The presence of macro-H2A enhances the interaction of the histone octamer wi [...] (372 aa)
HIST1H4BHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
SART3Spliceosome associated factor 3, U4/U6 recycling protein. (943 aa)
HIST1H4B-2Histone cluster 1, H4d. (103 aa)
POGZPogo transposable element derived with ZNF domain. (1322 aa)
CENPTCentromere protein T; Component of the CENPA-NAC (nucleosome-associated) complex, a complex that plays a central role in assembly of kinetochore proteins, mitotic progression and chromosome segregation (By similarity). The CENPA-NAC complex recruits the CENPA-CAD (nucleosome distal) complex and may be involved in incorporation of newly synthesized CENPA into centromeres (By similarity). Part of a nucleosome-associated complex that binds specifically to histone H3-containing nucleosomes at the centromere, as opposed to nucleosomes containing CENPA. Component of the heterotetrameric CENP [...] (649 aa)
NASPNuclear autoantigenic sperm protein. (456 aa)
H1-10H1 histone family member X. (215 aa)
ENSGALP00000054050Uncharacterized protein. (171 aa)
HIST1H4B-3Histone cluster 1, H4-IV, germinal H4-like 6 (similar to human histone cluster 1, class H4 genes). (103 aa)
HJURPUncharacterized protein. (772 aa)
TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C. (878 aa)
CENPWCentromere protein W; Component of the CENPA-NAC (nucleosome-associated) complex, a complex that plays a central role in assembly of kinetochore proteins, mitotic progression and chromosome segregation (By similarity). The CENPA-NAC complex recruits the CENPA-CAD (nucleosome distal) complex and may be involved in incorporation of newly synthesized CENPA into centromeres (By similarity). Part of a nucleosome-associated complex that binds specifically to histone H3-containing nucleosomes at the centromere, as opposed to nucleosomes containing CENPA. Component of the heterotetrameric CENP [...] (76 aa)
TAF8Transcription initiation factor TFIID subunit 8; Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription (By similarity). (312 aa)
ITGB3BPCentromere protein R; Transcription coregulator that can have both coactivator and corepressor functions. Involved in the coactivation of nuclear receptors for retinoid X (RXRs) and thyroid hormone (TRs) in a ligand- dependent fashion. Probable component of a centromeric complex involved in assembly of kinetochore proteins, mitotic progression and chromosome segregation (By similarity). (179 aa)
CENPSCentromere protein S; DNA-binding component of the Fanconi anemia (FA) core complex. Required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage. In complex with CENPX (MHF heterodimer), crucial cofactor for FANCM in both binding and ATP- dependent remodeling of DNA. Stabilizes FANCM. In complex with CENPX and FANCM (but not other FANC proteins), rapidly recruited to blocked forks and promotes gene conversion at blocked re [...] (139 aa)
POLE3CBFD_NFYB_HMF domain-containing protein. (143 aa)
CENPNCentromere protein N; Probable component of a centromeric complex involved in assembly of kinetochore proteins, mitotic progression and chromosome segregation; Belongs to the CENP-N/CHL4 family. (352 aa)
SOX9Transcription factor SOX-9; Transcription factor that selectively activates enhancer through its interaction with a DNA-binding partner factor. Activates enhancer of COL2A1 through its binding with DNA sequence 5'-ATTCAT-3'. In response to bone morphogenetic protein stimulus, phosphorylation is induced and then sumoylation, allowing cooperation with SNAI2 to trigger neural crest delamination. Functions at the level of mesenchymal cell condensation by inducing cartilage development in limbs and by changing the aggregation properties of limb mesenchymal cells. Regulates the cell fate dec [...] (494 aa)
OIP5Mis18 domain-containing protein. (213 aa)
CENPHCentromere protein H; Component of the CENPA-HI complex, a centromeric complex involved in assembly of kinetochore proteins, mitotic progression and chromosome segregation. Required for the localization of CENPC but not CENPA to the centromere. It however may be involved in incorporation of newly synthesized CENPA into centromeres via its interaction with the CENPA-NAC complex; Belongs to the CENP-H/MCM16 family. (235 aa)
H3F3CHistone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
BRF2BRF2 RNA polymerase III transcription initiation factor subunit. (415 aa)
CENPOCentromere protein O; Component of the CENPA-HI complex, a centromeric complex involved in assembly of kinetochore proteins, mitotic progression and chromosome segregation (By similarity). Involved in kinetochore assembly and required for recovery from spindle damage; Belongs to the CENP-O/MCM21 family. (325 aa)
MIS18AMIS18 kinetochore protein A. (204 aa)
CENPKCentromere protein K; Component of the CENPA-HI complex, a centromeric complex involved in assembly of kinetochore proteins, mitotic progression and chromosome segregation. (362 aa)
CDT1Chromatin licensing and DNA replication factor 1. (745 aa)
GMNNUncharacterized protein. (224 aa)
CENPECentromere protein E; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (2228 aa)
SHPRHSNF2 histone linker PHD RING helicase. (1691 aa)
CENPICentromere protein I; Component of the CENPA-HI complex, a centromeric complex involved in assembly of kinetochore proteins, mitotic progression and chromosome segregation. Required for the localization of CENPC but not CENPA to the centromere. It however may be involved in incorporation of newly synthesized CENPA into centromeres via its interaction with the CENPA-NAC complex. (753 aa)
HIST2H3A-2Histone H3.2-like. (136 aa)
HIST1H110Histone H1.10; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. (220 aa)
LOC107053803Histone H2B 7; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (126 aa)
LOC415780TAFH domain-containing protein. (1024 aa)
ENSGALP00000055994Histone H3; Belongs to the histone H3 family. (136 aa)
PADI1Peptidylarginine deiminase type I. (661 aa)
HIST1H2B8Histone H2B 8; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (126 aa)
HIST1H101Histone H1.01; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. (220 aa)
H2BE1Histone H2B; Belongs to the histone H2B family. (118 aa)
RRN3Uncharacterized protein. (619 aa)
HIST1H46Histone cluster 1, H4-VI, germinal H4 (similar to human histone cluster 1, class H4 genes). (103 aa)
GTF2A2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
CHAF1AChromatin assembly factor 1 subunit A; Core component of the CAF-1 complex, a complex thought to mediate chromatin assembly in DNA replication and DNA repair. Involved in rapid nucleosome formation during DNA replication. (937 aa)
GTF2BGeneral transcription factor IIB. (344 aa)
TBPTATA-box-binding protein; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. (302 aa)
POLR1ERNA polymerase I subunit E. (445 aa)
H2AFY2Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (372 aa)
SIRT6Deacetylase sirtuin-type domain-containing protein. (378 aa)
RAD52DNA repair protein RAD52 homolog; Involved in double-stranded break repair. Plays a central role in genetic recombination and DNA repair by promoting the annealing of complementary single-stranded DNA and by stimulation of the RAD51 recombinase (By similarity). (422 aa)
TAF13Uncharacterized protein. (124 aa)
H3F3BH3 histone, family 3B. (136 aa)
HIST1H4B-4Histone cluster 1, H4i. (103 aa)
RHOGL-2Transcription initiation factor TFIID subunit. (1860 aa)
HIST1H2B7L4Histone cluster 1,H2B-VII-like 4 (similar to human histone cluster 1, class H2B, member N). (126 aa)
HIST1H4B-5Histone cluster 2, H4b. (103 aa)
TAF6TATA-box binding protein associated factor 6. (721 aa)
ENSGALP00000067477Uncharacterized protein. (178 aa)
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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