STRINGSTRING
MYD88 MYD88 ATG10 ATG10 BIRC5 BIRC5 AMBRA1 AMBRA1 VAMP3 VAMP3 CUL4A CUL4A ATG3 ATG3 NTRK1 NTRK1 BCL2L13 BCL2L13 BCL2 BCL2 TOLLIP TOLLIP BAG3 BAG3 BNIP3 BNIP3 TBC1D5 TBC1D5 ATG14 ATG14 MAPKAPK2 MAPKAPK2 ATG16L1 ATG16L1 NCOA4 NCOA4 ATG12 ATG12 NBR1 NBR1 NRBF2 NRBF2 BECN1 BECN1 DAPK2 DAPK2 MTOR MTOR PTEN PTEN RICTOR RICTOR BHMT2 BHMT2 WIPI2 WIPI2 MAD2L2 MAD2L2 ULK2 ULK2 VMP1 VMP1 DEPTOR DEPTOR STMN4 STMN4 STMN1 STMN1 ACTB ACTB MAPKAPK3 MAPKAPK3 DAPK3 DAPK3 CACUL1 CACUL1 MUL1 MUL1 HDAC7 HDAC7 EGFR EGFR ULK1 ULK1 UVRAG UVRAG STX17 STX17 HMGB1 HMGB1 ATG13 ATG13 ESR1 ESR1 RETREG1 RETREG1 CDC37 CDC37 RHEB RHEB PRKN PRKN RB1 RB1 RALB RALB IFNA3 IFNA3 LOC100857512 LOC100857512 MXD3 MXD3 STK36 STK36 TAX1BP1 TAX1BP1 MAP1LC3A MAP1LC3A ATG7 ATG7 ATG5 ATG5 CUL4B CUL4B ULK4 ULK4 ATG2B ATG2B SNAP29 SNAP29 PINK1 PINK1 CUL5 CUL5 DAPK1 DAPK1 FUNDC1 FUNDC1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MYD88Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (299 aa)
ATG10Autophagy related 10. (227 aa)
BIRC5Uncharacterized protein. (142 aa)
AMBRA1Autophagy and beclin 1 regulator 1. (872 aa)
VAMP3V-SNARE coiled-coil homology domain-containing protein. (104 aa)
CUL4ACullin 4A; Belongs to the cullin family. (767 aa)
ATG3Autophagy-related protein 3. (313 aa)
NTRK1High affinity nerve growth factor receptor; Receptor tyrosine kinase involved in the development and the maturation of the central and peripheral nervous systems through regulation of proliferation, differentiation and survival of sympathetic and nervous neurons. High affinity receptor for NGF which is its primary ligand, it can also bind and be activated by NTF3/neurotrophin-3. Upon dimeric NGF ligand-binding, undergoes homodimerization, autophosphorylation and activation. Recruits, phosphorylates and/or activates several downstream effectors that regulate distinct overlapping signali [...] (790 aa)
BCL2L13BCL2 like 13. (470 aa)
BCL2Apoptosis regulator Bcl-2; Suppresses apoptosis in a variety of cell systems including factor-dependent lymphohematopoietic and neural cells. Regulates cell death by controlling the mitochondrial membrane permeability. Appears to function in a feedback loop system with caspases. Inhibits caspase activity either by preventing the release of cytochrome c from the mitochondria and/or by binding to the apoptosis-activating factor (APAF-1). (233 aa)
TOLLIPToll-interacting protein; Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products. Connects the ubiquitin pathway to autophagy by functioning as a ubiquitin-ATG8 family adapter and thus mediating autophagic clearance of ubiquitin conjugates. The TOLLIP-dependent selective autophagy pathway plays an important role in clearance of cytotoxic polyQ proteins aggregates (By similarity). (274 aa)
BAG3BCL2 associated athanogene 3. (560 aa)
BNIP3BCL2 interacting protein 3. (155 aa)
TBC1D5TBC1 domain family member 5. (834 aa)
ATG14Autophagy related 14. (492 aa)
MAPKAPK2MAPK activated protein kinase 2; Belongs to the protein kinase superfamily. (395 aa)
ATG16L1Autophagy related 16 like 1. (623 aa)
NCOA4Uncharacterized protein. (601 aa)
ATG12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (146 aa)
NBR1NBR1 autophagy cargo receptor. (928 aa)
NRBF2Uncharacterized protein. (435 aa)
BECN1Beclin-1; Plays a central role in autophagy (By similarity). Acts as core subunit of different PI3K complex forms that mediate formation of phosphatidylinositol 3-phosphate and are believed to play a role in multiple membrane trafficking pathways such as initiation of autophagosomes, maturation of autophagosomes and endocytosis (By similarity). Involved in regulation of degradative endocytic trafficking and required for the abcission step in cytokinesis, probably in the context of PI3KC3-C2 (By similarity). Belongs to the beclin family. (447 aa)
DAPK2Death associated protein kinase 2; Belongs to the protein kinase superfamily. (356 aa)
MTORSerine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2521 aa)
PTENPhosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family. (423 aa)
RICTORRPTOR independent companion of MTOR complex 2. (1711 aa)
BHMT2Hcy-binding domain-containing protein; Involved in the regulation of homocysteine metabolism. (405 aa)
WIPI2WD repeat domain phosphoinositide-interacting protein 2; Component of the autophagy machinery that controls the major intracellular degradation process by which cytoplasmic materials are packaged into autophagosomes and delivered to lysosomes for degradation. Involved in an early step of the formation of preautophagosomal structures. (436 aa)
MAD2L2Mitotic spindle assembly checkpoint protein MAD2B; Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also play a role in signal transduction in response to DNA damage. May regulate the activation of the [...] (211 aa)
ULK2Unc-51 like autophagy activating kinase 2. (1001 aa)
VMP1Vacuole membrane protein 1. (406 aa)
DEPTORUncharacterized protein. (413 aa)
STMN4Stathmin; Belongs to the stathmin family. (199 aa)
STMN1Stathmin; Involved in the regulation of the microtubule (MT) filament system by destabilizing microtubules. It prevents assembly and promotes disassembly of microtubules (By similarity). (172 aa)
ACTBActin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (375 aa)
MAPKAPK3Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (392 aa)
DAPK3Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (457 aa)
CACUL1Cullin domain-containing protein; Belongs to the cullin family. (377 aa)
MUL1Mitochondrial E3 ubiquitin protein ligase 1. (252 aa)
HDAC7Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1250 aa)
EGFREpidermal growth factor receptor; Receptor tyrosine kinase binding ligands of the EGF family and activating several signaling cascades to convert extracellular cues into appropriate cellular responses. Known ligands include EGF and TGFA/TGF-alpha. Ligand binding triggers receptor homo- and/or heterodimerization and autophosphorylation on key cytoplasmic residues (By similarity). The phosphorylated receptor recruits adapter proteins like GRB2 which in turn activates complex downstream signaling cascades (By similarity). Activates at least 4 major downstream signaling cascades including [...] (1226 aa)
ULK1Unc-51 like autophagy activating kinase 1. (1081 aa)
UVRAGC2 domain-containing protein. (707 aa)
STX17t-SNARE coiled-coil homology domain-containing protein. (302 aa)
HMGB1High mobility group protein B1; Multifunctional redox sensitive protein with various roles in different cellular compartments. Nuclear functions are attributed to fully reduced HGMB1. Associates with chromatin and binds DNA with a preference to non-canonical DNA structures such as single-stranded DNA, DNA-containing cruciforms or bent structures, supercoiled DNA and ZDNA. Can bent DNA and enhance DNA flexibility by looping thus providing a mechanism to promote activities on various gene promoters. Can restructure the canonical nucleosome. Proposed to be an universal biosensor for nucle [...] (215 aa)
ATG13Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (540 aa)
ESR1Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (651 aa)
RETREG1Reticulophagy regulator 1. (365 aa)
CDC37Hsp90 co-chaperone Cdc37; Co-chaperone that binds to numerous kinases and promotes their interaction with the Hsp90 complex, resulting in stabilization and promotion of their activity. (519 aa)
RHEBRas homolog, mTORC1 binding. (184 aa)
PRKNE3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. (488 aa)
RB1Retinoblastoma-associated protein; Key regulator of entry into cell division that acts as a tumor suppressor. Acts as a transcription repressor of E2F1 target genes. Directly involved in heterochromatin formation by maintaining overall chromatin structure and, in particular, that of constitutive heterochromatin by stabilizing histone methylation. Recruits and targets histone methyltransferases SUV39H1, KMT5B and KMT5C, leading to epigenetic transcriptional repression. Controls histone H4 'Lys-20' trimethylation. Also acts as a transcription repressor of E2F target genes by recruiting c [...] (984 aa)
RALBRAS like proto-oncogene B. (259 aa)
IFNA3Interferon. (193 aa)
LOC100857512Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (391 aa)
MXD3FYVE domain-containing protein. (619 aa)
STK36Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (151 aa)
TAX1BP1Uncharacterized protein. (816 aa)
MAP1LC3AMicrotubule associated protein 1 light chain 3 alpha. (121 aa)
ATG7Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...] (709 aa)
ATG5Autophagy protein 5; Involved in autophagic vesicle formation. (288 aa)
CUL4BCullin 4B; Belongs to the cullin family. (883 aa)
ULK4Uncharacterized protein. (406 aa)
ATG2BAutophagy related 2B. (2077 aa)
SNAP29t-SNARE coiled-coil homology domain-containing protein. (248 aa)
PINK1PTEN induced kinase 1. (364 aa)
CUL5Cullin 5; Belongs to the cullin family. (662 aa)
DAPK1Uncharacterized protein. (1430 aa)
FUNDC1FUN14 domain-containing protein 1; Acts as an activator of hypoxia-induced mitophagy, an important mechanism for mitochondrial quality control; Belongs to the FUN14 family. (234 aa)
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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