STRINGSTRING
SCFD1 SCFD1 NEFM NEFM VAMP1 VAMP1 SRCIN1 SRCIN1 BDNF BDNF RPTOR RPTOR DNM1L DNM1L U2AF2 U2AF2 FUS FUS ATXN2 ATXN2 ENSGALP00000069661 ENSGALP00000069661 CACNB3 CACNB3 SNCA SNCA NEGR1 NEGR1 SORT1 SORT1 NLGN2 NLGN2 GNB4 GNB4 MFF MFF NEFL NEFL SPARCL1 SPARCL1 ACTB ACTB CNTN1 CNTN1 VPS26A VPS26A DPP6 DPP6 LANCL1 LANCL1 AGO1 AGO1 EWSR1 EWSR1 ELAVL4 ELAVL4 SV2B SV2B ENSGALP00000055994 ENSGALP00000055994 SLC17A6 SLC17A6 ARFGAP2 ARFGAP2 CACUL1 CACUL1 ITGB1 ITGB1 ATXN10 ATXN10 GAD1 GAD1 HNRNPDL HNRNPDL DHX36 DHX36 SEC22B SEC22B CUL2 CUL2 DDX17 DDX17 DDB1 DDB1 STAU2 STAU2 CUL4B CUL4B SLC6A1 SLC6A1 SYT2 SYT2 SNX16 SNX16 HNRNPH2 HNRNPH2 SLC4A10 SLC4A10 LSM12 LSM12 GPM6A GPM6A VDAC1 VDAC1 ILF2 ILF2 HIST1H3H HIST1H3H SYT1 SYT1 ELAVL2 ELAVL2 PRNP PRNP PRPF3 PRPF3 SOD1 SOD1 H3F3C H3F3C CUL4A CUL4A DDX1 DDX1 DDX3X DDX3X DHX15 DHX15 TIA1 TIA1 RTCB RTCB RBX1 RBX1 FAM98A FAM98A RAB21 RAB21 ERI3 ERI3 ELAVL1 ELAVL1 MAPK3 MAPK3 VCP VCP NUBP2 NUBP2 TARDBP TARDBP DDX5 DDX5 VPS35 VPS35 URM1 URM1 CBL CBL CRBN CRBN SNAP25 SNAP25 PLP1 PLP1 FAM98B FAM98B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCFD1Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (632 aa)
NEFMNeurofilament medium polypeptide; Neurofilaments usually contain three intermediate filament proteins: L, M, and H which are involved in the maintenance of neuronal caliber. (858 aa)
VAMP1V-SNARE coiled-coil homology domain-containing protein. (119 aa)
SRCIN1SRC kinase signaling inhibitor 1. (1571 aa)
BDNFBrain-derived neurotrophic factor; Important signaling molecule that activates signaling cascades downstream of NTRK2 (By similarity). During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS. The versatility of BDNF is emphasized by its contribution to a range of adaptive neuronal responses including lo [...] (254 aa)
RPTORRegulatory associated protein of MTOR complex 1. (1374 aa)
DNM1LUncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (735 aa)
U2AF2U2 small nuclear RNA auxiliary factor 2. (699 aa)
FUSRRM domain-containing protein. (571 aa)
ATXN2Ataxin 2. (1066 aa)
ENSGALP00000069661Histone H3; Belongs to the histone H3 family. (98 aa)
CACNB3Calcium voltage-gated channel auxiliary subunit beta 3. (479 aa)
SNCAAlpha-synuclein; Belongs to the synuclein family. (143 aa)
NEGR1Neuronal growth regulator 1; May be involved in cell-adhesion. May participate in the regulation of neurite outgrowth in the developing brain. Belongs to the immunoglobulin superfamily. IgLON family. (500 aa)
SORT1Sortilin. (954 aa)
NLGN2Neuroligin 2. (599 aa)
GNB4G protein subunit beta 4. (340 aa)
MFFMitochondrial fission factor. (252 aa)
NEFLNeurofilament light; Belongs to the intermediate filament family. (373 aa)
SPARCL1SPARC like 1. (658 aa)
ACTBActin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (375 aa)
CNTN1Contactin-1; Mediates cell surface interactions during nervous system development. Interaction with TNR enhances the neurite outgrowth. Belongs to the immunoglobulin superfamily. Contactin family. (1023 aa)
VPS26AVPS26, retromer complex component A. (326 aa)
DPP6Dipeptidyl peptidase like 6; Belongs to the peptidase S9B family. (797 aa)
LANCL1Uncharacterized protein. (400 aa)
AGO1Uncharacterized protein; Belongs to the argonaute family. (857 aa)
EWSR1Uncharacterized protein. (730 aa)
ELAVL4ELAV-like protein; Belongs to the RRM elav family. (402 aa)
SV2BSynaptic vesicle glycoprotein 2B. (705 aa)
ENSGALP00000055994Histone H3; Belongs to the histone H3 family. (136 aa)
SLC17A6MFS domain-containing protein. (585 aa)
ARFGAP2Arf-GAP domain-containing protein. (540 aa)
CACUL1Cullin domain-containing protein; Belongs to the cullin family. (377 aa)
ITGB1Integrin beta-1; Integrins alpha-1/beta-1, alpha-2/beta-1, alpha-10/beta-1 and alpha-11/beta-1 are receptors for collagen. Integrins alpha-1/beta-1 and alpha-2/beta-1 recognize the proline-hydroxylated sequence G-F-P-G- E-R in collagen. Integrins alpha-2/beta-1, alpha-3/beta-1, alpha- 4/beta-1, alpha-5/beta-1, alpha-8/beta-1, alpha-10/beta-1, alpha- 11/beta-1 and alpha-V/beta-1 are receptors for fibronectin. Alpha- 4/beta-1 recognizes one or more domains within the alternatively spliced CS-1 and CS-5 regions of fibronectin. Integrin alpha-5/beta-1 is a receptor for fibrinogen. Integrin [...] (822 aa)
ATXN10Ataxin 10. (480 aa)
GAD1Glutamate decarboxylase 67. (590 aa)
HNRNPDLHeterogeneous nuclear ribonucleoprotein D-like; Acts as a transcriptional regulator. Binds DNA and RNA (By similarity). (301 aa)
DHX36DEAH-box helicase 36. (987 aa)
SEC22BVesicle-trafficking protein SEC22b; SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER. (215 aa)
CUL2CULLIN_2 domain-containing protein; Belongs to the cullin family. (774 aa)
DDX17DEAD-box helicase 17; Belongs to the DEAD box helicase family. (655 aa)
DDB1DNA damage-binding protein 1; Required for DNA repair. Binds to DDB2 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair (By similarity). Also appears to function as a component of numerous distinct DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the DCX E3 ubiquitin-protein li [...] (1139 aa)
STAU2Uncharacterized protein. (642 aa)
CUL4BCullin 4B; Belongs to the cullin family. (883 aa)
SLC6A1Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (598 aa)
SYT2Synaptotagmin 2. (490 aa)
SNX16PX domain-containing protein. (347 aa)
HNRNPH2Heterogeneous nuclear ribonucleoprotein H1-like protein. (519 aa)
SLC4A10Anion exchange protein. (1116 aa)
LSM12Protein LSM12 homolog; Belongs to the LSM12 family. (153 aa)
GPM6ANeuronal proteolipid GPM6A. (278 aa)
VDAC1Uncharacterized protein. (307 aa)
ILF2Interleukin enhancer binding factor 2. (519 aa)
HIST1H3HHistone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
SYT1Synaptotagmin-1; Calcium sensor that participates in triggering neurotransmitter release at the synapse (By similarity). May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. May play a role in dendrite formation by melanocytes; Belongs to the synaptotagmin family. (430 aa)
ELAVL2ELAV-like protein; Belongs to the RRM elav family. (450 aa)
PRNPMajor prion protein homolog; Its primary physiological function is unclear. Has cytoprotective activity against internal or environmental stresses. May play a role in neuronal development and synaptic plasticity. May be required for neuronal myelin sheath maintenance. May play a role in iron uptake and iron homeostasis. Soluble oligomers are toxic to cultured neuroblastoma cells and induce apoptosis (in vitro). Association with GPC1 (via its heparan sulfate chains) targets PRNP to lipid rafts. Also provides Cu(2+) or ZN(2+) for the ascorbate-mediated GPC1 deaminase degradation of its h [...] (273 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). (684 aa)
SOD1Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family. (164 aa)
H3F3CHistone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
CUL4ACullin 4A; Belongs to the cullin family. (767 aa)
DDX1ATP-dependent RNA helicase DDX1; Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity. Acts as a positive regulator of transcription. May be involved in 3'-end cleavage and polyadenylation of pre-mRNAs. Binds DNA and RNA. Component of the tRNA-splicing ligase complex required to facilitate the enzymatic turnover of catalytic subunit RTCB (By similarity). Binds (via helicase ATP-binding domain) on both short and long poly(I:C) dsRNA (By similarity). (740 aa)
DDX3XDEAD-box helicase 3,X-linked; Belongs to the DEAD box helicase family. (651 aa)
DHX15Uncharacterized protein. (762 aa)
TIA1TIA-1. (372 aa)
RTCBRNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs. (505 aa)
RBX1RING-type domain-containing protein. (108 aa)
FAM98AUncharacterized protein. (551 aa)
RAB21RAB21, member RAS oncogene family. (213 aa)
ERI3ERI1 exoribonuclease family member 3. (244 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (326 aa)
MAPK3Mitogen-activated protein kinase. (421 aa)
VCPValosin containing protein. (806 aa)
NUBP2Cytosolic Fe-S cluster assembly factor NUBP2; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP2/CFD1 subfamily. (272 aa)
TARDBPTAR DNA-binding protein 43; Probably involved in transcriptional repression (By similarity). May play a role in the maintenance of the circadian clock periodicity (By similarity). (414 aa)
DDX5Uncharacterized protein; Belongs to the DEAD box helicase family. (603 aa)
VPS35Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (799 aa)
URM1Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically [...] (101 aa)
CBLUncharacterized protein. (903 aa)
CRBNProtein cereblon; Substrate recognition component of a DCX (DDB1-CUL4-X-box) E3 protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Normal degradation of key regulatory proteins is required for normal limb outgrowth and expression of the fibroblast growth factor FGF8. May also play a role in the assembly and neuronal surface expression of large-conductance calcium-activated potassium channels in brain regions involved in memory and learning. (445 aa)
SNAP25Synaptosomal-associated protein 25; t-SNARE involved in the molecular regulation of neurotransmitter release. May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion (By similarity). Belongs to the SNAP-25 family. (206 aa)
PLP1Myelin proteolipid protein; This is the major myelin protein from the central nervous system. It plays an important role in the formation or maintenance of the multilamellar structure of myelin; Belongs to the myelin proteolipid protein family. (277 aa)
FAM98BFamily with sequence similarity 98 member B. (439 aa)
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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