STRINGSTRING
WNT1 WNT1 LMO1 LMO1 LHX2 LHX2 CUX1 CUX1 CDK1 CDK1 SRC SRC LEUTX LEUTX CUX2 CUX2 LHX1 LHX1 SHH SHH PIK3IP1 PIK3IP1 FEZF2 FEZF2 SST SST SFRP5 SFRP5 RELN RELN NEUROD1 NEUROD1 FEZF1 FEZF1 DLX5 DLX5 DMRT3 DMRT3 LHX8 LHX8 GLI2 GLI2 GRIN2B GRIN2B CCNA2 CCNA2 SOX10 SOX10 CXCR4 CXCR4 PBX1 PBX1 SIM1 SIM1 CCNA1 CCNA1 EBF1 EBF1 CDH6 CDH6 FGF8 FGF8 NR2F1 NR2F1 IRX4 IRX4 ERBB4 ERBB4 GADD45G GADD45G KLF4 KLF4 CALB2 CALB2 SEMA3A SEMA3A ISL1 ISL1 SOX5 SOX5 SP9 SP9 FOXP1 FOXP1 LHX6 LHX6 CCK CCK NFIB NFIB NRP2 NRP2 GADD45B GADD45B SLIT2 SLIT2 OTX2 OTX2 SOX2 SOX2 SP8 SP8 OLIG2 OLIG2 CXCL12 CXCL12 ASCL1 ASCL1 PVALB PVALB TLE1 TLE1 WNT5A WNT5A TBR1 TBR1 GLI3 GLI3 ARX ARX SOX14 SOX14 GLI1 GLI1 GSX2 GSX2 HGF HGF VRK2 VRK2 POU6F2 POU6F2 GBX2 GBX2 DLX2 DLX2 EMX1 EMX1 TRIM8 TRIM8 GAD1 GAD1 GSX1 GSX1 FOXG1 FOXG1 NKX2-2 NKX2-2 GAD2 GAD2 CDH4 CDH4 NKX2-1 NKX2-1 IRX1 IRX1 TENM1 TENM1 PAX3 PAX3 NEUROG1 NEUROG1 SIX3 SIX3 MEIS2 MEIS2 NRP1 NRP1 PDGFRA PDGFRA IRX2 IRX2 DLX3 DLX3 EMX2 EMX2 MEIS1 MEIS1 CDK5 CDK5 DLX6 DLX6 MITF MITF PAX6 PAX6 OTX1 OTX1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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WNT1Protein Wnt-1; Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Acts in the canonical Wnt signaling pathway by promoting beta-catenin-dependent transcriptional activation. Developmental protein that promotes cell proliferation in the developing spinal cord. Has a role in osteoblast function, bone development and bone homeostasis (By similarity). (550 aa)
LMO1LIM domain only 1. (156 aa)
LHX2LIM homeodomain. (400 aa)
CUX1CASP_C domain-containing protein. (678 aa)
CDK1Cyclin-dependent kinase 1; Plays a key role in the control of the eukaryotic cell cycle (By similarity). It is required in higher cells for entry into S-phase and mitosis (By similarity). p34 is a component of the kinase complex that phosphorylates the repetitive C-terminus of RNA polymerase II (By similarity). May play a role in regulating the amplitude of the cyclic expression of circadian clock genes (By similarity). Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (303 aa)
SRCProto-oncogene tyrosine-protein kinase Src; Non-receptor protein tyrosine kinase which is activated following engagement of many different classes of cellular receptors including immune response receptors, integrins and other adhesion receptors, receptor protein tyrosine kinases, G protein-coupled receptors as well as cytokine receptors. Participates in signaling pathways that control a diverse spectrum of biological activities including gene transcription, immune response, cell adhesion, cell cycle progression, apoptosis, migration, and transformation. Due to functional redundancy bet [...] (539 aa)
LEUTXHomeobox domain-containing protein. (403 aa)
CUX2Homeobox protein cut-like. (1386 aa)
LHX1LIM/homeobox protein Lhx1; Transcriptional factor that defines subclasses of motoneurons that segregate into columns in the spinal cord and select distinct axon pathways. Acts in conjunction with ISL-2. (406 aa)
SHHSonic hedgehog protein N-product; [Sonic hedgehog protein]: The C-terminal part of the sonic hedgehog protein precursor displays an autoproteolysis and a cholesterol transferase activity (By similarity). Both activities result in the cleavage of the full-length protein into two parts (ShhN and ShhC) followed by the covalent attachment of a cholesterol moiety to the C-terminal of the newly generated ShhN (By similarity). Both activities occur in the reticulum endoplasmic (By similarity). Once cleaved, ShhC is degraded in the endoplasmic reticulum (By similarity). (425 aa)
PIK3IP1Phosphoinositide-3-kinase interacting protein 1. (255 aa)
FEZF2FEZ family zinc finger 2. (441 aa)
SSTSomatostatin-14; Somatostatin inhibits the release of somatotropin. (116 aa)
SFRP5Uncharacterized protein. (312 aa)
RELNReelin; Extracellular matrix serine protease that plays a role in layering of neurons in the cerebral cortex and cerebellum. Regulates microtubule function in neurons and neuronal migration. Affects migration of sympathetic preganglionic neurons in the spinal cord, where it seems to act as a barrier to neuronal migration. Enzymatic activity is important for the modulation of cell adhesion. Binding to the extracellular domains of lipoprotein receptors VLDLR and LRP8/APOER2 induces tyrosine phosphorylation of DAB1 and modulation of TAU phosphorylation (By similarity); Belongs to the reel [...] (3462 aa)
NEUROD1Neurogenic differentiation factor 1; Acts as a transcriptional activator. Mediates transcriptional activation by binding to E box-containing promoter. Acts as a differentiation factor during neurogenesis. Induces photoreceptor cell overproduction in vivo and de novo generation in vitro. May play a role in photoreceptor cell production. Binds DNA on E-box consensus sequence 5'-CANNTG-3'. (357 aa)
FEZF1FEZ family zinc finger 1. (438 aa)
DLX5Homeobox protein DLX-5; Transcriptional factor involved in bone development. Could be involved in apical ectodermal ridge activity, pattern formation, and cartilage differentiation. Binds to DNA; Belongs to the distal-less homeobox family. (286 aa)
DMRT3Doublesex and mab-3 related transcription factor 3. (466 aa)
LHX8Uncharacterized protein. (347 aa)
GLI2Zinc finger protein GLI2; Functions as transcription regulator in the hedgehog (Hh) pathway. Functions as transcriptional activator. May also function as transcriptional repressor. Binds to the DNA sequence 5'-GAACCACCCA-3' (By similarity). Is involved in the smoothened (SHH) signaling pathway. Required for normal skeleton development (By similarity). (1528 aa)
GRIN2BGlutamate ionotropic receptor NMDA type subunit 2B. (1504 aa)
CCNA2Cyclin-A2; Cyclin which controls both the G1/S and the G2/M transition phases of the cell cycle. Functions through the formation of specific serine/threonine kinase holoenzyme complexes with the cyclin-dependent protein kinases CDK1 and CDK2. The cyclin subunit confers the substrate specificity of these complexes and differentially interacts with and activates CDK1 and CDK2 throughout the cell cycle. (395 aa)
SOX10Transcription factor SOX-10; Transcription factor that plays a central role in developing and mature glia. Specifically activates expression of myelin genes, during oligodendrocyte (OL) maturation, thereby playing a central role in oligodendrocyte maturation and CNS myelination. (461 aa)
CXCR4G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (362 aa)
PBX1PBX1A. (430 aa)
SIM1SIM bHLH transcription factor 1. (766 aa)
CCNA1Cyclin A1; Belongs to the cyclin family. (406 aa)
EBF1IPT/TIG domain-containing protein. (604 aa)
CDH6Cadherin-6; Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. (790 aa)
FGF8Fibroblast growth factor 8; Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration. Involved in initiation, outgrowth and patterning of the limbs; Belongs to the heparin-binding growth factors family. (214 aa)
NR2F1Nuclear receptor subfamily 2 group F member 1. (418 aa)
IRX4Iroquois-class homeodomain protein IRX-4; Regulates the chamber-specific expression of myosin isoforms by activating the expression of the ventricle myosin heavy chain-1 (Vmhc1) and suppressing the expression of the atrial myosin heavy chain-1 (Amhc1) in the ventricles. May play a critical role in establishing chamber-specific gene expression in the developing heart; Belongs to the TALE/IRO homeobox family. (485 aa)
ERBB4Receptor protein-tyrosine kinase. (1276 aa)
GADD45GGrowth arrest and DNA-damage-inducible protein 45 gamma. (159 aa)
KLF4Uncharacterized protein. (111 aa)
CALB2Calretinin; Calretinin is a calcium-binding protein which is abundant in auditory neurons. (311 aa)
SEMA3ASemaphorin-3A; Induces the collapse and paralysis of neuronal growth cones. Could serve as a ligand that guides specific growth cones by a motility-inhibiting mechanism. Binds to neuropilin; Belongs to the semaphorin family. (815 aa)
ISL1Insulin gene enhancer protein ISL-1; Acts as a transcriptional regulator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA- 3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Binds to insulin gene enhancer sequences (By similarity). Defines subclasses of motoneurons that segregate into columns in the spinal cord and select distinct axon pathways. Acts in conjunction with LHX1, LHX3 and ISL2. Binds to insulin gene enhancer sequences (By similarity). Essential for heart d [...] (349 aa)
SOX5Transcription factor LSox5-II. (772 aa)
SP9Sp9 transcription factor. (459 aa)
FOXP1Forkhead box protein P1; Transcriptional repressor. (686 aa)
LHX6LIM homeobox 6. (380 aa)
CCKCholecystokinin-70; This peptide hormone induces gall bladder contraction and the release of pancreatic enzymes in the gut. Its function in the brain is not clear (By similarity). It also decreases food intake and regulates gastrointestinal physiological processes. (130 aa)
NFIBNuclear factor 1 B-type; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (560 aa)
NRP2Uncharacterized protein. (969 aa)
GADD45BGrowth arrest and DNA damage inducible beta. (169 aa)
SLIT2Uncharacterized protein. (1533 aa)
OTX2Homeodomain transcription factor. (289 aa)
SOX2Transcription factor SOX-2; Transcriptional activator. Binds to the consensus DNA sequence 5'-TCATTGTTGTTG-3'. In cooperation with other transcription factors, binds to the promoter sequence of the crystallin gene to activate transcription in the lens. Downstream SRRT target that mediates the promotion of neural stem cell self-renewal (By similarity). Keeps neural cells undifferentiated by counteracting the activity of proneural proteins and suppresses neuronal differentiation. May function as a switch in neuronal development. (312 aa)
SP8Transcription factor Sp8; Transcription factor which plays a key role in limb development. Positively regulates FGF8 expression in the apical ectodermal ridge (AER) and contributes to limb outgrowth in embryos. Belongs to the Sp1 C2H2-type zinc-finger protein family. (480 aa)
OLIG2Oligodendrocyte transcription factor 2; Required for oligodendrocyte and motor neuron specification in the spinal cord. (298 aa)
CXCL12SCY domain-containing protein; Belongs to the intercrine alpha (chemokine CxC) family. (167 aa)
ASCL1BHLH domain-containing protein. (219 aa)
PVALBParvalbumin, muscle; In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions (By similarity); Belongs to the parvalbumin family. (134 aa)
TLE1TLE family member 1, transcriptional corepressor. (780 aa)
WNT5AProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (385 aa)
TBR1T-box brain transcription factor 1. (677 aa)
GLI3Transcriptional repressor GLI3R; Has a dual function as a transcriptional activator and a repressor of the sonic hedgehog (Shh) pathway, and plays a role in limb development. The full-length GLI3 form (GLI3FL) acts as an activator (GLI3A) while GLI3R, its C-terminally truncated form, acts as a repressor. (1576 aa)
ARXAristaless related homeobox. (513 aa)
SOX14Transcription factor SOX-14; Acts as a negative regulator of transcription. (240 aa)
GLI1Zinc finger protein GLI1; Acts as a transcriptional activator. Binds to the DNA consensus sequence 5'-GACCACCCA-3' (By similarity). May regulate the transcription of specific genes during normal development. May play a role in craniofacial development and digital development, as well as development of the central nervous system and gastrointestinal tract. Mediates SHH signaling. Plays a role in cell proliferation and differentiation via its role in SHH signaling. Belongs to the GLI C2H2-type zinc-finger protein family. (1281 aa)
GSX2GS homeobox 2. (263 aa)
HGFHepatocyte growth factor; Potent mitogen for mature parenchymal hepatocyte cells, seems to be a hepatotrophic factor, and acts as a growth factor for a broad spectrum of tissues and cell types. Activating ligand for the receptor tyrosine kinase MET by binding to it and promoting its dimerization. Belongs to the peptidase S1 family. Plasminogen subfamily. (726 aa)
VRK2VRK serine/threonine kinase 2. (540 aa)
POU6F2Uncharacterized protein. (166 aa)
GBX2Homeobox protein GBX-2; May act as a transcription factor for cell pluripotency and differentiation in the embryo. (339 aa)
DLX2Distal-less homeobox 2. (253 aa)
EMX1Empty spiracles homeobox 1. (235 aa)
TRIM8RING-type domain-containing protein. (551 aa)
GAD1Glutamate decarboxylase 67. (590 aa)
GSX1GS homeobox 1. (247 aa)
FOXG1Forkhead box protein G1; May determine the nasotemporal axis of the retina, and consequently specify the topographical projection of the retinal ganglion-cell axons to the tectum by controlling expression of their target genes. (451 aa)
NKX2-2Homeobox domain-containing protein. (272 aa)
GAD2Glutamate decarboxylase 2. (807 aa)
CDH4Cadherin-4; Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. May play an important role in retinal development. (913 aa)
NKX2-1Homeobox domain-containing protein. (345 aa)
IRX1Homeobox domain-containing protein. (467 aa)
TENM1Teneurin C-terminal-associated peptide; Involved in neural development, regulating the establishment of proper connectivity within the nervous system. May function as a cellular signal transducer (By similarity). [Ten-1 intracellular domain]: Induces gene transcription activation; Belongs to the tenascin family. Teneurin subfamily. (2713 aa)
PAX3Paired-box transcription factor protein PAX3. (484 aa)
NEUROG1Neurogenin 1. (179 aa)
SIX3Homeobox protein SIX3; Transcriptional regulator which can act as both a transcriptional repressor and activator by binding a ATTA homeodomain core recognition sequence on these target genes. During forebrain development represses WNT1 expression allowing zona limitans intrathalamica formation and thereby ensuring proper anterio-posterior patterning of the diencephalon and formation of the rostral diencephalon. Acts as a direct upstream activator of SHH expression in the rostral diencephalon ventral midline and that in turn SHH maintains its expression. In addition, Six3 activity is re [...] (314 aa)
MEIS2Homeoprotein Meis2a.2. (394 aa)
NRP1Neuropilin-1; Receptor involved in the development of the cardiovascular system, in angiogenesis, in the formation of certain neuronal circuits and in organogenesis outside the nervous system (By similarity). Mediates the chemorepulsant activity of semaphorins. Binding to VEGFA initiates a signaling pathway needed for motor neuron axon guidance and cell body migration, including for the caudal migration of facial motor neurons from rhombomere 4 to rhombomere 6 during embryonic development (By similarity). Regulates mitochondrial iron transport via interaction (By similarity); Belongs t [...] (914 aa)
PDGFRAPlatelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development. Required for normal development of the gastrointestinal tract. Plays a role in cell migration and chemotaxis in wound he [...] (1106 aa)
IRX2Homeobox domain-containing protein. (536 aa)
DLX3Homeobox domain-containing protein. (451 aa)
EMX2Empty spiracles homeobox 2. (336 aa)
MEIS1Homeobox domain-containing protein. (465 aa)
CDK5Protein kinase domain-containing protein. (522 aa)
DLX6Homeobox domain-containing protein. (283 aa)
MITFBHLH domain-containing protein. (519 aa)
PAX6Paired box protein Pax-6; May be a transcription factor with important functions in eye and nasal development. (500 aa)
OTX1Orthodenticle homeobox 1. (335 aa)
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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