5 items (Dendrobium catenatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MA16_Dca011486	Uncharacterized protein. (308 aa)
	MA16_Dca024867	Uncharacterized protein. (417 aa)
	MA16_Dca020117	Zinc finger CCCH domain-containing protein 36. (899 aa)
	FRI	FRIGIDA-like protein; Belongs to the Frigida family. (536 aa)
	MA16_Dca007622	Uncharacterized protein. (278 aa)

Your Current Organism:

Dendrobium catenatum

NCBI taxonomy Id: 906689
Other names: D. catenatum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FRI	MA16_Dca011486	A0A2I0WLV2	A0A2I0VFN8	FRIGIDA-like protein; Belongs to the Frigida family.	Uncharacterized protein.	0.524
FRI	MA16_Dca020117	A0A2I0WLV2	A0A2I0WEP1	FRIGIDA-like protein; Belongs to the Frigida family.	Zinc finger CCCH domain-containing protein 36.	0.487
FRI	MA16_Dca024867	A0A2I0WLV2	A0A2I0VQ69	FRIGIDA-like protein; Belongs to the Frigida family.	Uncharacterized protein.	0.513
MA16_Dca011486	FRI	A0A2I0VFN8	A0A2I0WLV2	Uncharacterized protein.	FRIGIDA-like protein; Belongs to the Frigida family.	0.524
MA16_Dca011486	MA16_Dca020117	A0A2I0VFN8	A0A2I0WEP1	Uncharacterized protein.	Zinc finger CCCH domain-containing protein 36.	0.462
MA16_Dca020117	FRI	A0A2I0WEP1	A0A2I0WLV2	Zinc finger CCCH domain-containing protein 36.	FRIGIDA-like protein; Belongs to the Frigida family.	0.487
MA16_Dca020117	MA16_Dca011486	A0A2I0WEP1	A0A2I0VFN8	Zinc finger CCCH domain-containing protein 36.	Uncharacterized protein.	0.462
MA16_Dca020117	MA16_Dca024867	A0A2I0WEP1	A0A2I0VQ69	Zinc finger CCCH domain-containing protein 36.	Uncharacterized protein.	0.499
MA16_Dca024867	FRI	A0A2I0VQ69	A0A2I0WLV2	Uncharacterized protein.	FRIGIDA-like protein; Belongs to the Frigida family.	0.513
MA16_Dca024867	MA16_Dca020117	A0A2I0VQ69	A0A2I0WEP1	Uncharacterized protein.	Zinc finger CCCH domain-containing protein 36.	0.499