(146 nodes) ER to Golgi Anterograde Transport, and Retrograde transport at the Trans-Golgi-Network network (Parus major)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARL5A	ADP-ribosylation factor-like protein 5A isoform X1. (179 aa)
	COG4	Conserved oligomeric Golgi complex subunit 4. (781 aa)
	COG7	Conserved oligomeric Golgi complex subunit 7. (697 aa)
	USO1	General vesicular transport factor p115 isoform X1. (1055 aa)
	CTSC	Dipeptidyl peptidase 1. (417 aa)
	ARL13A	ADP-ribosylation factor-like protein 13A isoform X2. (140 aa)
	RAB30	Ras-related protein Rab-30. (203 aa)
	COPA	Coatomer protein complex subunit alpha. (915 aa)
	TMED7	Transmembrane emp24 domain-containing protein 7. (216 aa)
	COPE	Coatomer protein complex subunit epsilon. (222 aa)
	TRAPPC11	Trafficking protein particle complex subunit 11. (1133 aa)
	ENSPMJP00000002489	annotation not available (116 aa)
	TRAPPC5	Trafficking protein particle complex subunit 5. (341 aa)
	VPS54	VPS54 subunit of GARP complex. (934 aa)
	PLEKHA8	Pleckstrin homology domain-containing family A member 8 isoform X1. (520 aa)
	COG2	Conserved oligomeric Golgi complex subunit 2 isoform X1. (738 aa)
	GOSR2	Golgi SNAP receptor complex member 2 isoform X1. (203 aa)
	NSF	Vesicle-fusing ATPase isoform X1. (752 aa)
	C19orf12	Protein C19orf12 homolog isoform X1. (330 aa)
	TMED2	Transmembrane emp24 domain-containing protein 2 isoform X2. (201 aa)
	ENSPMJP00000003806	annotation not available (130 aa)
	LOC107215386	Uncharacterized protein LOC107215386. (321 aa)
	LCA5	Lebercilin. (682 aa)
	ENSPMJP00000004447	annotation not available (61 aa)
	PRR15L	Proline-rich protein 15-like protein isoform X1. (99 aa)
	SYS1	SYS1 golgi trafficking protein. (156 aa)
	SEC23B	Protein transport protein Sec23B isoform X1. (802 aa)
	SEC22C	SEC22 vesicle trafficking protein A/C. (304 aa)
	ENSPMJP00000005000	annotation not available (246 aa)
	GORASP1	Golgi reassembly-stacking protein 1. (430 aa)
	RINT1	RAD50-interacting protein 1. (767 aa)
	COG5	Conserved oligomeric Golgi complex subunit 5 isoform X1. (816 aa)
	RAB43	Ras-related protein Rab-43. (215 aa)
	TMF1	TATA element modulatory factor. (1106 aa)
	ARF3	ADP ribosylation factor 3. (181 aa)
	VTI1A	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1. (224 aa)
	RGP1	RAB6A-GEF complex partner protein 2. (387 aa)
	SEC23IP	SEC23-interacting protein. (996 aa)
	PLEKHA1	Pleckstrin homology domain-containing family A member 1 isoform X1. (415 aa)
	ARL14	ADP-ribosylation factor-like protein 14. (187 aa)
	COPB1	Coatomer subunit beta. (953 aa)
	SEC16A	Protein transport protein Sec16A isoform X1. (2416 aa)
	SCFD2	Sec1 family domain-containing protein 2. (644 aa)
	BNIP1	Protein transport protein SEC20. (418 aa)
	SURF4	Surfeit locus protein 4 isoform X1. (269 aa)
	ARL4C	ADP-ribosylation factor-like protein 4C. (220 aa)
	VPS51	Vacuolar protein sorting-associated protein 51 homolog. (782 aa)
	BET1L	Blocked early in transport 1. (111 aa)
	LMAN2	Vesicular integral-membrane protein VIP36. (338 aa)
	LMAN1	Protein ERGIC-53 isoform X1. (499 aa)
	TRAPPC3	Trafficking protein particle complex subunit 3 isoform X1. (196 aa)
	ARL5B	ADP-ribosylation factor-like protein 5B isoform X1. (204 aa)
	ARFRP1	ADP-ribosylation factor related protein 1. (457 aa)
	STX12	Syntaxin 12/13. (227 aa)
	PREB	Prolactin regulatory element-binding protein isoform X1. (416 aa)
	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1 isoform X1. (422 aa)
	SEC24D	Protein transport protein Sec24D. (1034 aa)
	TRAPPC4	Trafficking protein particle complex subunit 4. (219 aa)
	ARCN1	Coatomer subunit delta. (499 aa)
	KDELR3	ER lumen protein-retaining receptor 3. (263 aa)
	RAB41	Ras-related protein Rab-41 isoform X1. (211 aa)
	VPS50	Syndetin. (967 aa)
	BET1	Blocked early in transport 1. (115 aa)
	ZW10	Centromere/kinetochore protein zw10 homolog. (782 aa)
	CTSZ	Cathepsin X. (304 aa)
	SEC31A	Protein transport protein Sec31A isoform X1. (1326 aa)
	STX16	Syntaxin 16. (304 aa)
	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 2/3. (517 aa)
	RAB19	Ras-related protein Rab-19. (214 aa)
	GOLGA2	Golgin subfamily A member 2 isoform X1. (1046 aa)
	SEC24A	Protein transport protein Sec24A isoform X1. (1092 aa)
	SAR1B	GTP-binding protein SAR1b. (197 aa)
	LOC107205557	USP6 N-terminal-like protein. (808 aa)
	STX7	Syntaxin 7. (281 aa)
	LOC107204172	Hyaluronoglucosaminidase. (482 aa)
	SEC22B	Vesicle-trafficking protein SEC22b isoform X1. (215 aa)
	SEC24B	Protein transport protein Sec24B isoform X1. (1233 aa)
	ENSPMJP00000013410	annotation not available (193 aa)
	ENSPMJP00000013520	annotation not available (236 aa)
	EIPR1	EARP and GARP complex-interacting protein 1. (387 aa)
	TRAPPC12	Trafficking protein particle complex subunit 12 isoform X1. (788 aa)
	VAMP4	Vesicle associated membrane protein 4. (117 aa)
	ARL4A	ADP-ribosylation factor-like protein 4A. (191 aa)
	TRAPPC10	Trafficking protein particle complex subunit 10. (1263 aa)
	USE1	Unconventional SNARE in the endoplasmic reticulum protein 1. (375 aa)
	SMIM7	Small integral membrane protein 7 isoform X1. (63 aa)
	BLZF1	Golgin-45. (397 aa)
	TFG	Protein TFG isoform X1. (419 aa)
	TRAPPC2B	Trafficking protein particle complex subunit 2. (152 aa)
	TMED3	Transmembrane emp24 domain-containing protein 3. (287 aa)
	TRAPPC9	Trafficking protein particle complex subunit 9 isoform X1. (1073 aa)
	CNIH1	Cornichon family AMPA receptor auxiliary protein 1. (144 aa)
	DDHD1	Phospholipase DDHD1. (906 aa)
	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2 isoform X1. (572 aa)
	NBAS	Neuroblastoma-amplified sequence isoform X1. (2381 aa)
	HYAL3	Hyaluronoglucosaminidase. (446 aa)
	COPG1	Coatomer subunit gamma-1. (874 aa)
	ENSPMJP00000017420	Coatomer subunit gamma-2-like. (124 aa)
	ARL1	ADP-ribosylation factor-like protein 1. (181 aa)
	RPS6KC1	Ribosomal protein S6 kinase delta-1 isoform X1. (1077 aa)
	COG8	Conserved oligomeric Golgi complex subunit 8. (1151 aa)
	TRAPPC2L	Trafficking protein particle complex subunit 2-like protein. (139 aa)
	NAPB	NSF attachment protein beta. (330 aa)
	TRAPPC3L	Trafficking protein particle complex subunit 3-like protein isoform X1. (181 aa)
	STX17	Syntaxin 17. (301 aa)
	MCFD2	Multiple coagulation factor deficiency protein 2 isoform X1. (212 aa)
	NAPG	Gamma-soluble NSF attachment protein. (314 aa)
	TRAPPC8	Trafficking protein particle complex subunit 8 isoform X1. (1471 aa)
	COG3	Conserved oligomeric Golgi complex subunit 3 isoform X1. (831 aa)
	ARL11	ADP-ribosylation factor-like protein 11. (207 aa)
	COG6	Conserved oligomeric Golgi complex subunit 6 isoform X1. (648 aa)
	VTI1B	Vesicle transport through interaction with t-SNAREs homolog 1B. (232 aa)
	RABL6	Rab-like protein 6. (887 aa)
	SAR1A	GTP-binding protein SAR1a. (198 aa)
	SEC24C	Protein transport protein Sec24C isoform X1. (1107 aa)
	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1. (1900 aa)
	YKT6	Synaptobrevin homolog YKT6. (198 aa)
	TGOLN2	Trans-Golgi network integral membrane protein 2 isoform X1. (572 aa)
	VAMP8	Vesicle-associated membrane protein 8. (137 aa)
	RAB2A	Ras-related protein Rab-2A. (212 aa)
	SEC31B	SEC31 homolog B, COPII coat complex component. (1020 aa)
	TRAPPC13	Trafficking protein particle complex subunit 13 isoform X1. (417 aa)
	RIC1	RAB6A-GEF complex partner protein 1 isoform X1. (1418 aa)
	STX18	Syntaxin-18 isoform X1. (330 aa)
	COPB2	Coatomer subunit beta' isoform X1. (884 aa)
	SCFD1	Sec1 family domain-containing protein 1. (632 aa)
	SEC23A	Protein transport protein Sec23A. (765 aa)
	TRAPPC6B	Trafficking protein particle complex subunit 6B isoform X1. (158 aa)
	LOC107203498	Transmembrane emp24 domain-containing protein 11-like. (217 aa)
	SNAP29	Synaptosomal-associated protein 29. (251 aa)
	TMED10	Transmembrane emp24 domain-containing protein 10. (320 aa)
	COG1	Conserved oligomeric Golgi complex subunit 1 isoform X1. (1060 aa)
	KDELR2	ER lumen protein-retaining receptor 2. (212 aa)
	DDHD2	Phospholipase DDHD2. (670 aa)
	GOLGA4	Golgin subfamily A member 4 isoform X1. (2358 aa)
	LOC107212444	Ankyrin repeat domain-containing protein 40-like. (357 aa)
	ANKRD40	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40. (363 aa)
	RPS6KA1	Ribosomal protein S6 kinase A1. (714 aa)
	GORASP2	Golgi reassembly-stacking protein 2 isoform X1. (530 aa)
	STX6	Syntaxin 6. (254 aa)
	SEC16B	Protein transport protein Sec16B isoform X1. (1008 aa)
	STX8	Syntaxin-8 isoform X1. (489 aa)
	GOLGA1	Golgin A1. (630 aa)
	GOSR1	Golgi SNAP receptor complex member 1 isoform X1. (248 aa)
	VPS53	Vacuolar protein sorting-associated protein 53 homolog isoform X1. (831 aa)
	SEC22A	Vesicle-trafficking protein SEC22a isoform X1. (308 aa)

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD40	ARCN1	ENSPMJP00000024671	ENSPMJP00000009440	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Coatomer subunit delta.	0.424
ANKRD40	CNIH1	ENSPMJP00000024671	ENSPMJP00000015574	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Cornichon family AMPA receptor auxiliary protein 1.	0.405
ANKRD40	COPA	ENSPMJP00000024671	ENSPMJP00000001412	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Coatomer protein complex subunit alpha.	0.524
ANKRD40	COPB2	ENSPMJP00000024671	ENSPMJP00000022288	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Coatomer subunit beta' isoform X1.	0.421
ANKRD40	DDHD1	ENSPMJP00000024671	ENSPMJP00000015624	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Phospholipase DDHD1.	0.504
ANKRD40	DDHD2	ENSPMJP00000024671	ENSPMJP00000024403	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Phospholipase DDHD2.	0.504
ANKRD40	ENSPMJP00000003806	ENSPMJP00000024671	ENSPMJP00000003806	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	annotation not available	0.566
ANKRD40	ENSPMJP00000004447	ENSPMJP00000024671	ENSPMJP00000004447	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	annotation not available	0.654
ANKRD40	ENSPMJP00000013410	ENSPMJP00000024671	ENSPMJP00000013410	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	annotation not available	0.566
ANKRD40	GOSR2	ENSPMJP00000024671	ENSPMJP00000003396	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Golgi SNAP receptor complex member 2 isoform X1.	0.582
ANKRD40	LCA5	ENSPMJP00000024671	ENSPMJP00000004393	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Lebercilin.	0.467
ANKRD40	LMAN1	ENSPMJP00000024671	ENSPMJP00000008124	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Protein ERGIC-53 isoform X1.	0.664
ANKRD40	LMAN2	ENSPMJP00000024671	ENSPMJP00000008072	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Vesicular integral-membrane protein VIP36.	0.543
ANKRD40	MCFD2	ENSPMJP00000024671	ENSPMJP00000019500	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Multiple coagulation factor deficiency protein 2 isoform X1.	0.454
ANKRD40	SAR1A	ENSPMJP00000024671	ENSPMJP00000020623	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	GTP-binding protein SAR1a.	0.747
ANKRD40	SAR1B	ENSPMJP00000024671	ENSPMJP00000012537	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	GTP-binding protein SAR1b.	0.747
ANKRD40	SCFD1	ENSPMJP00000024671	ENSPMJP00000022435	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Sec1 family domain-containing protein 1.	0.425
ANKRD40	SEC16A	ENSPMJP00000024671	ENSPMJP00000007740	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Protein transport protein Sec16A isoform X1.	0.566
ANKRD40	SEC16B	ENSPMJP00000024671	ENSPMJP00000025557	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Protein transport protein Sec16B isoform X1.	0.566
ANKRD40	SEC22A	ENSPMJP00000024671	ENSPMJP00000027325	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 40.	Vesicle-trafficking protein SEC22a isoform X1.	0.515