(8 nodes) Fatty acid elongation, polyunsaturated fatty acid network (Parus major)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ELOVL5	Elongation of very long chain fatty acids protein 5 isoform X1. (351 aa)
	LOC107205111	Elongation of very long chain fatty acids protein 4-like isoform X3. (269 aa)
	ELOVL6	Elongation of very long chain fatty acids protein 6. (265 aa)
	ELOVL4	Elongation of very long chain fatty acids protein 4 isoform X1. (314 aa)
	ELOVL3	Elongation of very long chain fatty acids protein 3. (272 aa)
	ELOVL7	Elongation of very long chain fatty acids protein 7. (296 aa)
	ELOVL2	Elongation of very long chain fatty acids protein 2. (313 aa)
	ELOVL1	Elongation of very long chain fatty acids protein 1 isoform X1. (290 aa)

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOVL1	ELOVL4	ENSPMJP00000026729	ENSPMJP00000004381	Elongation of very long chain fatty acids protein 1 isoform X1.	Elongation of very long chain fatty acids protein 4 isoform X1.	0.913
ELOVL1	ELOVL7	ENSPMJP00000026729	ENSPMJP00000021649	Elongation of very long chain fatty acids protein 1 isoform X1.	Elongation of very long chain fatty acids protein 7.	0.901
ELOVL1	LOC107205111	ENSPMJP00000026729	ENSPMJP00000012626	Elongation of very long chain fatty acids protein 1 isoform X1.	Elongation of very long chain fatty acids protein 4-like isoform X3.	0.911
ELOVL2	ELOVL5	ENSPMJP00000024906	ENSPMJP00000012004	Elongation of very long chain fatty acids protein 2.	Elongation of very long chain fatty acids protein 5 isoform X1.	0.903
ELOVL3	ELOVL5	ENSPMJP00000020888	ENSPMJP00000012004	Elongation of very long chain fatty acids protein 3.	Elongation of very long chain fatty acids protein 5 isoform X1.	0.925
ELOVL3	ELOVL6	ENSPMJP00000020888	ENSPMJP00000013316	Elongation of very long chain fatty acids protein 3.	Elongation of very long chain fatty acids protein 6.	0.905
ELOVL4	ELOVL1	ENSPMJP00000004381	ENSPMJP00000026729	Elongation of very long chain fatty acids protein 4 isoform X1.	Elongation of very long chain fatty acids protein 1 isoform X1.	0.913
ELOVL4	LOC107205111	ENSPMJP00000004381	ENSPMJP00000012626	Elongation of very long chain fatty acids protein 4 isoform X1.	Elongation of very long chain fatty acids protein 4-like isoform X3.	0.902
ELOVL5	ELOVL2	ENSPMJP00000012004	ENSPMJP00000024906	Elongation of very long chain fatty acids protein 5 isoform X1.	Elongation of very long chain fatty acids protein 2.	0.903
ELOVL5	ELOVL3	ENSPMJP00000012004	ENSPMJP00000020888	Elongation of very long chain fatty acids protein 5 isoform X1.	Elongation of very long chain fatty acids protein 3.	0.925
ELOVL5	ELOVL6	ENSPMJP00000012004	ENSPMJP00000013316	Elongation of very long chain fatty acids protein 5 isoform X1.	Elongation of very long chain fatty acids protein 6.	0.934
ELOVL5	ELOVL7	ENSPMJP00000012004	ENSPMJP00000021649	Elongation of very long chain fatty acids protein 5 isoform X1.	Elongation of very long chain fatty acids protein 7.	0.905
ELOVL6	ELOVL3	ENSPMJP00000013316	ENSPMJP00000020888	Elongation of very long chain fatty acids protein 6.	Elongation of very long chain fatty acids protein 3.	0.905
ELOVL6	ELOVL5	ENSPMJP00000013316	ENSPMJP00000012004	Elongation of very long chain fatty acids protein 6.	Elongation of very long chain fatty acids protein 5 isoform X1.	0.934
ELOVL7	ELOVL1	ENSPMJP00000021649	ENSPMJP00000026729	Elongation of very long chain fatty acids protein 7.	Elongation of very long chain fatty acids protein 1 isoform X1.	0.901
ELOVL7	ELOVL5	ENSPMJP00000021649	ENSPMJP00000012004	Elongation of very long chain fatty acids protein 7.	Elongation of very long chain fatty acids protein 5 isoform X1.	0.905
LOC107205111	ELOVL1	ENSPMJP00000012626	ENSPMJP00000026729	Elongation of very long chain fatty acids protein 4-like isoform X3.	Elongation of very long chain fatty acids protein 1 isoform X1.	0.911
LOC107205111	ELOVL4	ENSPMJP00000012626	ENSPMJP00000004381	Elongation of very long chain fatty acids protein 4-like isoform X3.	Elongation of very long chain fatty acids protein 4 isoform X1.	0.902