(15 nodes) ER-Phagosome pathway network (Parus major)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEC61A2	Protein transport protein Sec61 subunit alpha isoform X1. (491 aa)
	ENSPMJP00000004421	Class I histocompatibility antigen, F10 alpha chain-like. (223 aa)
	ENSPMJP00000005052	Class I histocompatibility antigen, F10 alpha chain. (373 aa)
	CELF4-2	CUGBP Elav-like family member 4 isoform X1. (131 aa)
	CELF4	CUGBP Elav-like family member 4. (394 aa)
	B2M	Beta-2-microglobulin. (120 aa)
	CELF6	CUGBP Elav-like family member 6 isoform X1. (480 aa)
	VAMP3	Vesicle-associated membrane protein 3. (115 aa)
	CELF5	CUGBP Elav-like family member 5 isoform X1. (462 aa)
	PDIA3	Protein disulfide-isomerase A3. (555 aa)
	SEC61A1	Protein transport protein SEC61 subunit alpha. (516 aa)
	SNAP23	Synaptosomal-associated protein 23. (218 aa)
	VAMP8	Vesicle-associated membrane protein 8. (137 aa)
	LOC107199185	ATP-binding cassette, subfamily B (MDR/TAP), member 3. (766 aa)
	PDIA4	Protein disulfide-isomerase A4. (650 aa)

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B2M	ENSPMJP00000004421	ENSPMJP00000009076	ENSPMJP00000004421	Beta-2-microglobulin.	Class I histocompatibility antigen, F10 alpha chain-like.	0.980
B2M	ENSPMJP00000005052	ENSPMJP00000009076	ENSPMJP00000005052	Beta-2-microglobulin.	Class I histocompatibility antigen, F10 alpha chain.	0.980
B2M	PDIA3	ENSPMJP00000009076	ENSPMJP00000015893	Beta-2-microglobulin.	Protein disulfide-isomerase A3.	0.787
B2M	PDIA4	ENSPMJP00000009076	ENSPMJP00000024511	Beta-2-microglobulin.	Protein disulfide-isomerase A4.	0.701
ENSPMJP00000004421	B2M	ENSPMJP00000004421	ENSPMJP00000009076	Class I histocompatibility antigen, F10 alpha chain-like.	Beta-2-microglobulin.	0.980
ENSPMJP00000004421	ENSPMJP00000005052	ENSPMJP00000004421	ENSPMJP00000005052	Class I histocompatibility antigen, F10 alpha chain-like.	Class I histocompatibility antigen, F10 alpha chain.	0.900
ENSPMJP00000004421	PDIA3	ENSPMJP00000004421	ENSPMJP00000015893	Class I histocompatibility antigen, F10 alpha chain-like.	Protein disulfide-isomerase A3.	0.955
ENSPMJP00000004421	PDIA4	ENSPMJP00000004421	ENSPMJP00000024511	Class I histocompatibility antigen, F10 alpha chain-like.	Protein disulfide-isomerase A4.	0.515
ENSPMJP00000005052	B2M	ENSPMJP00000005052	ENSPMJP00000009076	Class I histocompatibility antigen, F10 alpha chain.	Beta-2-microglobulin.	0.980
ENSPMJP00000005052	ENSPMJP00000004421	ENSPMJP00000005052	ENSPMJP00000004421	Class I histocompatibility antigen, F10 alpha chain.	Class I histocompatibility antigen, F10 alpha chain-like.	0.900
ENSPMJP00000005052	PDIA3	ENSPMJP00000005052	ENSPMJP00000015893	Class I histocompatibility antigen, F10 alpha chain.	Protein disulfide-isomerase A3.	0.955
ENSPMJP00000005052	PDIA4	ENSPMJP00000005052	ENSPMJP00000024511	Class I histocompatibility antigen, F10 alpha chain.	Protein disulfide-isomerase A4.	0.515
LOC107199185	PDIA3	ENSPMJP00000021505	ENSPMJP00000015893	ATP-binding cassette, subfamily B (MDR/TAP), member 3.	Protein disulfide-isomerase A3.	0.953
PDIA3	B2M	ENSPMJP00000015893	ENSPMJP00000009076	Protein disulfide-isomerase A3.	Beta-2-microglobulin.	0.787
PDIA3	ENSPMJP00000004421	ENSPMJP00000015893	ENSPMJP00000004421	Protein disulfide-isomerase A3.	Class I histocompatibility antigen, F10 alpha chain-like.	0.955
PDIA3	ENSPMJP00000005052	ENSPMJP00000015893	ENSPMJP00000005052	Protein disulfide-isomerase A3.	Class I histocompatibility antigen, F10 alpha chain.	0.955
PDIA3	LOC107199185	ENSPMJP00000015893	ENSPMJP00000021505	Protein disulfide-isomerase A3.	ATP-binding cassette, subfamily B (MDR/TAP), member 3.	0.953
PDIA3	PDIA4	ENSPMJP00000015893	ENSPMJP00000024511	Protein disulfide-isomerase A3.	Protein disulfide-isomerase A4.	0.470
PDIA3	SEC61A1	ENSPMJP00000015893	ENSPMJP00000016995	Protein disulfide-isomerase A3.	Protein transport protein SEC61 subunit alpha.	0.506
PDIA3	SEC61A2	ENSPMJP00000015893	ENSPMJP00000001732	Protein disulfide-isomerase A3.	Protein transport protein Sec61 subunit alpha isoform X1.	0.506