STRINGSTRING
SES66215.1 SES66215.1 SES66497.1 SES66497.1 SES63067.1 SES63067.1 SES63085.1 SES63085.1 SES63103.1 SES63103.1 sucD sucD sucC sucC SES72029.1 SES72029.1 SES72050.1 SES72050.1 SES68641.1 SES68641.1 accD accD SES75530.1 SES75530.1 gpmA gpmA gcvT gcvT gcvH gcvH gcvPA gcvPA gcvPB gcvPB SES79554.1 SES79554.1 SES81723.1 SES81723.1 ackA ackA tal tal SES84177.1 SES84177.1 SES83886.1 SES83886.1 SES83912.1 SES83912.1 SES83959.1 SES83959.1 eno eno pgi pgi tpiA tpiA glk glk SES98768.1 SES98768.1 SES97871.1 SES97871.1 SES97895.1 SES97895.1 SES99848.1 SES99848.1 SES99874.1 SES99874.1 SES99914.1 SES99914.1 SET01381.1 SET01381.1 SET02587.1 SET02587.1 rpiA rpiA SET08103.1 SET08103.1 SET08825.1 SET08825.1 SET09045.1 SET09045.1 SET11188.1 SET11188.1 SET11425.1 SET11425.1 pgl pgl SET11876.1 SET11876.1 SET11906.1 SET11906.1 SET14097.1 SET14097.1 SET14443.1 SET14443.1 SET14463.1 SET14463.1 SET14495.1 SET14495.1 SET14523.1 SET14523.1 SET14550.1 SET14550.1 SET13887.1 SET13887.1 SET14737.1 SET14737.1 SET14785.1 SET14785.1 fumC fumC SET15543.1 SET15543.1 ilvA ilvA ppc ppc SET17348.1 SET17348.1 SET18212.1 SET18212.1 SET18459.1 SET18459.1 SET19599.1 SET19599.1 SET19624.1 SET19624.1 folD folD SET19701.1 SET19701.1 SET20636.1 SET20636.1 SET22593.1 SET22593.1 SET25827.1 SET25827.1 SET25846.1 SET25846.1 SET27167.1 SET27167.1 SET27239.1 SET27239.1 SET31792.1 SET31792.1 SET33854.1 SET33854.1 SET33869.1 SET33869.1 SET33882.1 SET33882.1 glyA glyA SET34193.1 SET34193.1 gpmA-2 gpmA-2 SET35765.1 SET35765.1 SET35863.1 SET35863.1 SET37610.1 SET37610.1 pgk pgk SET42451.1 SET42451.1 SET42473.1 SET42473.1 pfp pfp SET42390.1 SET42390.1 SET42416.1 SET42416.1 accA accA prs prs gcvPA-2 gcvPA-2 gcvPB-2 gcvPB-2 mdh mdh SET52366.1 SET52366.1 SET53329.1 SET53329.1 SET53093.1 SET53093.1 SET54354.1 SET54354.1 acsA acsA SET56455.1 SET56455.1 sucC-2 sucC-2 sucD-2 sucD-2 SET56517.1 SET56517.1 cbbL-2 cbbL-2 SET57356.1 SET57356.1 SET57093.1 SET57093.1 fhs fhs SET59487.1 SET59487.1 SET59534.1 SET59534.1 SET61328.1 SET61328.1 SET63528.1 SET63528.1 serC serC SET70402.1 SET70402.1 SET71616.1 SET71616.1 cbbL cbbL
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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SES66215.1Ribulose 1,5-bisphosphate carboxylase small subunit. (118 aa)
SES66497.1Fructose-bisphosphate aldolase, class I. (349 aa)
SES63067.1Acyl-CoA hydrolase. (639 aa)
SES63085.1Short chain enoyl-CoA hydratase. (697 aa)
SES63103.1acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (442 aa)
sucDsuccinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (292 aa)
sucCsuccinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (388 aa)
SES72029.1Phosphoserine phosphatase. (277 aa)
SES72050.1Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+). (536 aa)
SES68641.1Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. (291 aa)
accDacetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (290 aa)
SES75530.1Sugar lactone lactonase YvrE. (368 aa)
gpmAPhosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (245 aa)
gcvTAminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. (363 aa)
gcvHGlycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (129 aa)
gcvPAGlycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (450 aa)
gcvPBGlycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (483 aa)
SES79554.1Pyruvate kinase; Belongs to the pyruvate kinase family. (479 aa)
SES81723.1Aconitase. (951 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (402 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily. (374 aa)
SES84177.1L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family. (458 aa)
SES83886.1S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (397 aa)
SES83912.1S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (284 aa)
SES83959.13-hydroxyacyl-CoA dehydrogenase. (838 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (427 aa)
pgiGlucose-6-phosphate isomerase; Belongs to the GPI family. (545 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (252 aa)
glkGlucokinase; Belongs to the bacterial glucokinase family. (368 aa)
SES98768.1Methane/ammonia monooxygenase subunit C. (40 aa)
SES97871.1Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (162 aa)
SES97895.1Biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase subunit alpha; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (452 aa)
SES99848.1Methane/ammonia monooxygenase subunit C. (61 aa)
SES99874.1Ammonia monooxygenase subunit A. (274 aa)
SES99914.1Ammonia monooxygenase subunit B. (420 aa)
SET01381.1Alanine-glyoxylate aminotransferase apoenzyme. (405 aa)
SET02587.1Methane/ammonia monooxygenase subunit C. (61 aa)
rpiARibose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (220 aa)
SET08103.1Hypothetical protein. (404 aa)
SET08825.1NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit. (592 aa)
SET09045.1Methane/ammonia monooxygenase subunit C. (40 aa)
SET11188.1Arsenate reductase. (115 aa)
SET11425.1D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (312 aa)
pgl6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (231 aa)
SET11876.1ATP-grasp domain-containing protein. (442 aa)
SET11906.1Uncharacterized conserved protein, contains ferritin-like DUF455 domain. (266 aa)
SET14097.1Hypothetical protein. (83 aa)
SET14443.12-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (455 aa)
SET14463.12-oxoglutarate dehydrogenase E1 component. (949 aa)
SET14495.1Citrate synthase; Belongs to the citrate synthase family. (432 aa)
SET14523.1Antitoxin CptB. (77 aa)
SET14550.1Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (231 aa)
SET13887.1Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (326 aa)
SET14737.1Dihydrolipoamide dehydrogenase. (473 aa)
SET14785.1Hypothetical protein. (205 aa)
fumCFumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (462 aa)
SET15543.1Biotin carboxylase. (434 aa)
ilvAL-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (503 aa)
ppcPhosphoenolpyruvate carboxylase, type 1; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (930 aa)
SET17348.1Hydroxypyruvate reductase. (425 aa)
SET18212.1Glucose 1-dehydrogenase. (271 aa)
SET18459.1Methane/ammonia monooxygenase subunit C. (61 aa)
SET19599.1Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (478 aa)
SET19624.1Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (886 aa)
folDMethenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (286 aa)
SET19701.15,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family. (281 aa)
SET20636.1Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (727 aa)
SET22593.1Hypothetical protein. (124 aa)
SET25827.1Hypothetical protein. (243 aa)
SET25846.1Hypothetical protein. (223 aa)
SET27167.1Dihydrolipoamide dehydrogenase. (487 aa)
SET27239.1Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (793 aa)
SET31792.1Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (225 aa)
SET33854.1Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (587 aa)
SET33869.1Succinate dehydrogenase subunit D. (117 aa)
SET33882.1Succinate dehydrogenase subunit C. (130 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (416 aa)
SET34193.1Isocitrate dehydrogenase (NADP). (416 aa)
gpmA-2Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (249 aa)
SET35765.1Fructose 6-phosphate aldolase. (233 aa)
SET35863.1Hypothetical protein. (127 aa)
SET37610.1acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
pgkPhosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (392 aa)
SET42451.1Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (333 aa)
SET42473.1Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (671 aa)
pfpPyrophosphate-dependent phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions. (419 aa)
SET42390.1Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (354 aa)
SET42416.1Pyruvate kinase; Belongs to the pyruvate kinase family. (487 aa)
accAacetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (343 aa)
prsRibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (310 aa)
gcvPA-2Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (450 aa)
gcvPB-2Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (501 aa)
mdhMalate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. (328 aa)
SET52366.1Hypothetical protein. (141 aa)
SET53329.1Phosphoribulokinase. (289 aa)
SET53093.1Pyruvate kinase. (624 aa)
SET54354.1Transcriptional regulator, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (153 aa)
acsAAcetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (655 aa)
SET56455.1beta-methylmalyl-CoA/L-malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (315 aa)
sucC-2malate-CoA ligase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (393 aa)
sucD-2Malate thiokinase small subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (295 aa)
SET56517.1Probable phosphoglycerate mutase. (174 aa)
cbbL-2Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (491 aa)
SET57356.1Ribulose 1,5-bisphosphate carboxylase small subunit. (144 aa)
SET57093.1AAA domain-containing protein. (145 aa)
fhsFormate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (541 aa)
SET59487.1Catalase; Belongs to the catalase family. (98 aa)
SET59534.1Serine O-acetyltransferase. (315 aa)
SET61328.1Dihydrolipoamide dehydrogenase. (602 aa)
SET63528.1D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (402 aa)
serCPhosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (364 aa)
SET70402.1Hypothetical protein. (78 aa)
SET71616.1Arsenate reductase; Belongs to the ArsC family. (118 aa)
cbbLRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (472 aa)
Your Current Organism:
Nitrosomonas marina
NCBI taxonomy Id: 917
Other names: N. marina, Nitrosomonas marina Koops et al. 2001, strain Nm 22
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