5 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_02086	Uncharacterized protein. (507 aa)
	PV08_02166	Uncharacterized protein. (220 aa)
	PV08_11903	Uncharacterized protein. (213 aa)
	PV08_09130	Uncharacterized protein. (225 aa)
	PV08_10419	Uncharacterized protein. (219 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_02086	PV08_02166	A0A0D1Z1K2	A0A0D1Z1R0	Uncharacterized protein.	Uncharacterized protein.	0.915
PV08_02086	PV08_09130	A0A0D1Z1K2	A0A0D1ZFU0	Uncharacterized protein.	Uncharacterized protein.	0.991
PV08_02086	PV08_10419	A0A0D1Z1K2	A0A0D2BID2	Uncharacterized protein.	Uncharacterized protein.	0.941
PV08_02086	PV08_11903	A0A0D1Z1K2	A0A0D1Z9W0	Uncharacterized protein.	Uncharacterized protein.	0.989
PV08_02166	PV08_02086	A0A0D1Z1R0	A0A0D1Z1K2	Uncharacterized protein.	Uncharacterized protein.	0.915
PV08_02166	PV08_09130	A0A0D1Z1R0	A0A0D1ZFU0	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_02166	PV08_10419	A0A0D1Z1R0	A0A0D2BID2	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_02166	PV08_11903	A0A0D1Z1R0	A0A0D1Z9W0	Uncharacterized protein.	Uncharacterized protein.	0.996
PV08_09130	PV08_02086	A0A0D1ZFU0	A0A0D1Z1K2	Uncharacterized protein.	Uncharacterized protein.	0.991
PV08_09130	PV08_02166	A0A0D1ZFU0	A0A0D1Z1R0	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_09130	PV08_10419	A0A0D1ZFU0	A0A0D2BID2	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_09130	PV08_11903	A0A0D1ZFU0	A0A0D1Z9W0	Uncharacterized protein.	Uncharacterized protein.	0.996
PV08_10419	PV08_02086	A0A0D2BID2	A0A0D1Z1K2	Uncharacterized protein.	Uncharacterized protein.	0.941
PV08_10419	PV08_02166	A0A0D2BID2	A0A0D1Z1R0	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_10419	PV08_09130	A0A0D2BID2	A0A0D1ZFU0	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_10419	PV08_11903	A0A0D2BID2	A0A0D1Z9W0	Uncharacterized protein.	Uncharacterized protein.	0.998
PV08_11903	PV08_02086	A0A0D1Z9W0	A0A0D1Z1K2	Uncharacterized protein.	Uncharacterized protein.	0.989
PV08_11903	PV08_02166	A0A0D1Z9W0	A0A0D1Z1R0	Uncharacterized protein.	Uncharacterized protein.	0.996
PV08_11903	PV08_09130	A0A0D1Z9W0	A0A0D1ZFU0	Uncharacterized protein.	Uncharacterized protein.	0.996
PV08_11903	PV08_10419	A0A0D1Z9W0	A0A0D2BID2	Uncharacterized protein.	Uncharacterized protein.	0.998