20 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_07993	Uncharacterized protein. (1244 aa)
	PV08_05771	Peptidase S59 domain-containing protein. (1820 aa)
	PV08_04262	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (357 aa)
	PV08_04272	TAP-C domain-containing protein. (430 aa)
	PV08_09276	RanBD1 domain-containing protein. (244 aa)
	PV08_09306	Nup54 domain-containing protein. (435 aa)
	PV08_02946	Uncharacterized protein. (500 aa)
	PV08_00216	Uncharacterized protein. (1126 aa)
	PV08_11941	Uncharacterized protein. (1346 aa)
	PV08_10468	Nsp1_C domain-containing protein. (657 aa)
	PV08_10778	ELYS domain-containing protein. (308 aa)
	PV08_08260	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (929 aa)
	PV08_06431	TPR_MLP1_2 domain-containing protein. (2030 aa)
	PV08_02621	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (461 aa)
	PV08_03456	WD_REPEATS_REGION domain-containing protein. (362 aa)
	PV08_03305	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (187 aa)
	PV08_00176	Uncharacterized protein. (1363 aa)
	PV08_02128	Uncharacterized protein. (1680 aa)
	PV08_06730	Uncharacterized protein. (404 aa)
	PV08_03329	RanBD1 domain-containing protein. (1397 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00176	PV08_00216	A0A0D2BKY2	A0A0D2A470	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00176	PV08_02128	A0A0D2BKY2	A0A0D2BR97	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00176	PV08_02621	A0A0D2BKY2	A0A0D2BH63	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.994
PV08_00176	PV08_02946	A0A0D2BKY2	A0A0D2A106	Uncharacterized protein.	Uncharacterized protein.	0.945
PV08_00176	PV08_03305	A0A0D2BKY2	A0A0D2BKE5	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.829
PV08_00176	PV08_03329	A0A0D2BKY2	A0A0D2C686	Uncharacterized protein.	RanBD1 domain-containing protein.	0.999
PV08_00176	PV08_03456	A0A0D2BKY2	A0A0D2BJS0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
PV08_00176	PV08_04262	A0A0D2BKY2	A0A0D1YPG9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.985
PV08_00176	PV08_04272	A0A0D2BKY2	A0A0D1YPH6	Uncharacterized protein.	TAP-C domain-containing protein.	0.830
PV08_00176	PV08_05771	A0A0D2BKY2	A0A0D1YL06	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.998
PV08_00176	PV08_06431	A0A0D2BKY2	A0A0D2BCN5	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.819
PV08_00176	PV08_06730	A0A0D2BKY2	A0A0D2BRV4	Uncharacterized protein.	Uncharacterized protein.	0.911
PV08_00176	PV08_07993	A0A0D2BKY2	A0A0D1YCW7	Uncharacterized protein.	Uncharacterized protein.	0.987
PV08_00176	PV08_08260	A0A0D2BKY2	A0A0D2B2F3	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.991
PV08_00176	PV08_09276	A0A0D2BKY2	A0A0D1ZGB9	Uncharacterized protein.	RanBD1 domain-containing protein.	0.928
PV08_00176	PV08_09306	A0A0D2BKY2	A0A0D1ZGE6	Uncharacterized protein.	Nup54 domain-containing protein.	0.995
PV08_00176	PV08_10468	A0A0D2BKY2	A0A0D2AWU1	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.982
PV08_00176	PV08_10778	A0A0D2BKY2	A0A0D2AXS0	Uncharacterized protein.	ELYS domain-containing protein.	0.973
PV08_00176	PV08_11941	A0A0D2BKY2	A0A0D2ATJ2	Uncharacterized protein.	Uncharacterized protein.	0.991
PV08_00216	PV08_00176	A0A0D2A470	A0A0D2BKY2	Uncharacterized protein.	Uncharacterized protein.	0.999